Literature DB >> 35170363

Evaluating the challenges and reproducibility of studies investigating DNA methylation signatures of psychological stress.

Yun Zhang1,2, Chunyu Liu3,4.   

Abstract

Psychological stress can increase the risk of a wide range of negative health outcomes. Studies have been completed to determine if DNA methylation changes occur in the human brain because of stress and are associated with long-term effects and disease, but results have been inconsistent. Human candidate gene studies (150) and epigenome-wide association studies (67) were systematically evaluated to assess how DNA methylation is impacted by stress during the prenatal period, early childhood and adulthood. The association between DNA methylation of NR3C1 exon 1F and child maltreatment and early life adversity was well demonstrated, but other genes did not exhibit a clear association. The reproducibility of individual CpG sites in epigenome-wide association studies was also poor. However, biological pathways, including stress response, brain development and immunity, have been consistently identified across different stressors throughout the life span. Future studies would benefit from the increased sample size, longitudinal design, standardized methodology, optimal quality control, and improved statistical procedures.

Entities:  

Keywords:  DNA methylation; adulthood; chronic; early life; prenatal; psychological stress; reproducibility; specificity

Mesh:

Substances:

Year:  2022        PMID: 35170363      PMCID: PMC8978984          DOI: 10.2217/epi-2021-0190

Source DB:  PubMed          Journal:  Epigenomics        ISSN: 1750-192X            Impact factor:   4.778


  135 in total

1.  Epigenome-wide DNA methylation in placentas from preterm infants: association with maternal socioeconomic status.

Authors:  Hudson P Santos; Arjun Bhattacharya; Elizabeth M Martin; Kezia Addo; Matt Psioda; Lisa Smeester; Robert M Joseph; Stephen R Hooper; Jean A Frazier; Karl C Kuban; T Michael O'Shea; Rebecca C Fry
Journal:  Epigenetics       Date:  2019-05-21       Impact factor: 4.528

2.  Child abuse, depression, and methylation in genes involved with stress, neural plasticity, and brain circuitry.

Authors:  Natalie Weder; Huiping Zhang; Kevin Jensen; Bao Zhu Yang; Arthur Simen; Andrea Jackowski; Deborah Lipschitz; Heather Douglas-Palumberi; Margrat Ge; Francheska Perepletchikova; Kerry O'Loughlin; James J Hudziak; Joel Gelernter; Joan Kaufman
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2014-01-27       Impact factor: 8.829

3.  Genetic control of individual differences in gene-specific methylation in human brain.

Authors:  Dandan Zhang; Lijun Cheng; Judith A Badner; Chao Chen; Qi Chen; Wei Luo; David W Craig; Margot Redman; Elliot S Gershon; Chunyu Liu
Journal:  Am J Hum Genet       Date:  2010-03-12       Impact factor: 11.025

4.  Factors underlying variable DNA methylation in a human community cohort.

Authors:  Lucia L Lam; Eldon Emberly; Hunter B Fraser; Sarah M Neumann; Edith Chen; Gregory E Miller; Michael S Kobor
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

5.  DNA methylation as a risk factor in the effects of early life stress.

Authors:  Erin L Kinnally; Caroline Feinberg; David Kim; Kerel Ferguson; Rudolph Leibel; Jeremy D Coplan; J John Mann
Journal:  Brain Behav Immun       Date:  2011-05-11       Impact factor: 7.217

6.  An investigation of child maltreatment and epigenetic mechanisms of mental and physical health risk.

Authors:  Dante Cicchetti; Susan Hetzel; Fred A Rogosch; Elizabeth D Handley; Sheree L Toth
Journal:  Dev Psychopathol       Date:  2016-10-03

7.  Psychological stress and the human immune system: a meta-analytic study of 30 years of inquiry.

Authors:  Suzanne C Segerstrom; Gregory E Miller
Journal:  Psychol Bull       Date:  2004-07       Impact factor: 17.737

8.  Prenatal Maternal Stress Predicts Methylation of Genes Regulating the Hypothalamic-Pituitary-Adrenocortical System in Mothers and Newborns in the Democratic Republic of Congo.

Authors:  Darlene A Kertes; Hayley S Kamin; David A Hughes; Nicole C Rodney; Samarth Bhatt; Connie J Mulligan
Journal:  Child Dev       Date:  2016 Jan-Feb

9.  Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge.

Authors:  Sara Mostafavi; Alexis Battle; Xiaowei Zhu; Alexander E Urban; Douglas Levinson; Stephen B Montgomery; Daphne Koller
Journal:  PLoS One       Date:  2013-07-18       Impact factor: 3.240

10.  Prenatal Stress, Fearfulness, and the Epigenome: Exploratory Analysis of Sex Differences in DNA Methylation of the Glucocorticoid Receptor Gene.

Authors:  Brendan D Ostlund; Elisabeth Conradt; Sheila E Crowell; Audrey R Tyrka; Carmen J Marsit; Barry M Lester
Journal:  Front Behav Neurosci       Date:  2016-07-12       Impact factor: 3.558

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  1 in total

Review 1.  Childhood Trauma and Epigenetics: State of the Science and Future.

Authors:  N Gladish; S M Merrill; Michael S Kobor
Journal:  Curr Environ Health Rep       Date:  2022-10-15
  1 in total

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