Literature DB >> 35169964

Bioinformatics Analysis and Experimental Study of Exonuclease 1 Gene in Lung Adenocarcinoma.

Shan Wang1, Weiguo Cai1, Jianyu Li1, Wenting An1, Hui Zheng1, Meiyan Liao2.   

Abstract

The objective of this study is to examine the role of Human Exonuclease 1(EXO1) gene in the diagnosis and prognosis of lung adenocarcinoma (LUAD), and predict the signal pathways EXO1 involved in. The clinical parameters and EXO1 expression datasets of LUAD patients were obtained from The Cancer Genome Atlas (TCGA), Oncomine and Gene Expression Omnibus (GEO) database. Wilcoxon rank-sum test was performed to determine whether EXO1 expression was upregulated in LUAD. The correlation between EXO1 expression and clinicopathological parameters was analyzed by Chi-square test, and Kaplan-Meier survival analysis and COX regression models were adopted to analyze and verify the correlation of EXO1 expression with OS of LUAD patients for the exploration of prognostic value of EXO1 in LUAD patients. The signaling pathway related to EXO1 was predicted by gene set enrichment analysis (GSEA). In addition, sera from LUAD patients and healthy subjects were collected, and real-time fluorescence quantitative polymerase chain reaction (RT-qPCR) was conducted to detect EXO1 expression. EXO1 expression was upregulated in LUAD patients with respect to normal individuals. EXO1 expression was negatively correlated with the prognosis and thus could independently predict the prognosis of LUAD patients. EXO1 gene was involved in 128 signal pathways, of which 9 pathways may be closely related. EXO1 was highly expressed in the blood of LUAD patients. High EXO1 expression can serve as an independent risk factor for poor prognosis, and the expression of serum EXO1 has certain diagnostic value for LUAD.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Bioinformatics; EXO1 gene; GEO; Lung adenocarcinoma; Oncomine; TCGA

Year:  2022        PMID: 35169964     DOI: 10.1007/s10528-022-10190-y

Source DB:  PubMed          Journal:  Biochem Genet        ISSN: 0006-2928            Impact factor:   1.890


  23 in total

1.  A single nucleotide polymorphism in EXO1 gene is associated with cervical cancer susceptibility in Chinese patients.

Authors:  Xiping Luo; Xiao-Shan Hong; Xing-Dong Xiong; Li-Qin Zeng; Chi Eung Danforn Lim
Journal:  Int J Gynecol Cancer       Date:  2012-02       Impact factor: 3.437

2.  Single-nucleotide polymorphism of the Exo1 gene: association with gastric cancer susceptibility and interaction with smoking in Taiwan.

Authors:  Da-Tian Bau; Hwei-Chung Wang; Chiu-Shong Liu; Chia-Lin Chang; Su-Yin Chiang; Rou-Fen Wang; Chia-Wen Tsai; Yen-Li Lo; Chao A Hsiung; Cheng-Chieh Lin; Chih-Yang Huang
Journal:  Chin J Physiol       Date:  2009-12-31       Impact factor: 1.764

3.  Human exonuclease I is required for 5' and 3' mismatch repair.

Authors:  Jochen Genschel; Laura R Bazemore; Paul Modrich
Journal:  J Biol Chem       Date:  2002-01-24       Impact factor: 5.157

4.  The significance of Exonuclease 1 K589E polymorphism on hepatocellular carcinoma susceptibility in the Turkish population: a case-control study.

Authors:  Süleyman Bayram; Hikmet Akkız; Aynur Bekar; Ersin Akgöllü; Selçuk Yıldırım
Journal:  Mol Biol Rep       Date:  2011-12-29       Impact factor: 2.316

5.  EXO1 overexpression is associated with poor prognosis of hepatocellular carcinoma patients.

Authors:  Yaoyao Dai; Zuxiong Tang; Zongguo Yang; Lan Zhang; Qing Deng; Xiaofeng Zhang; Yongchun Yu; Xing Liu; Junfeng Zhu
Journal:  Cell Cycle       Date:  2018-10-20       Impact factor: 4.534

Review 6.  Exonuclease 1 and its versatile roles in DNA repair.

Authors:  Guido Keijzers; Dekang Liu; Lene Juel Rasmussen
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-08-05       Impact factor: 8.250

7.  Identification of hub-methylated differentially expressed genes in patients with gestational diabetes mellitus by multi-omic WGCNA basing epigenome-wide and transcriptome-wide profiling.

Authors:  Min Chen; Jianying Yan; Qing Han; Jinying Luo; Qinjian Zhang
Journal:  J Cell Biochem       Date:  2019-12-30       Impact factor: 4.429

Review 8.  Human Exonuclease 1 (EXO1) Regulatory Functions in DNA Replication with Putative Roles in Cancer.

Authors:  Guido Keijzers; Daniela Bakula; Michael Angelo Petr; Nils Gedsig Kirkelund Madsen; Amanuel Teklu; Garik Mkrtchyan; Brenna Osborne; Morten Scheibye-Knudsen
Journal:  Int J Mol Sci       Date:  2018-12-25       Impact factor: 5.923

9.  Pan-cancer analysis identifies telomerase-associated signatures and cancer subtypes.

Authors:  Zhenhua Luo; Weixu Wang; Feng Li; Zhou Songyang; Xuyang Feng; Changchang Xin; Zhiming Dai; Yuanyan Xiong
Journal:  Mol Cancer       Date:  2019-06-10       Impact factor: 27.401

10.  Exonuclease 1 (Exo1) Participates in Mammalian Non-Homologous End Joining and Contributes to Drug Resistance in Ovarian Cancer.

Authors:  Dongyun He; Tao Li; Minjia Sheng; Ben Yang
Journal:  Med Sci Monit       Date:  2020-03-13
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