Noemi Cadmen1, Joana Bustamante1, Richard Rivera1, F Javier Torres2,3, Jorge Ontaneda1. 1. Departamento de Química, Universidad Técnica Particular de Loja, San Cayetano Alto, Loja 1101608, Ecuador. 2. Grupo de Química Computacional y Teórica (QCT-UR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá 111221, Colombia. 3. Grupo de Química Computacional y Teórica (QCT-USFQ), Departamento de Ingeniería Química, Universidad San Francisco de Quito (USFQ), Quito 170901, Ecuador.
Abstract
The modification of the rutile TiO2(110) surface with dopamine represents the best example of the functionalization of TiO2-based nanoparticles with catecholamines, which is of great interest for sunlight harvesting and drug delivery. However, there is little information on the dopamine-TiO2(110) adsorption complex in terms of thermodynamic properties and structural parameters such as bond coordination and orientation of the terminal ethyl-amino group. Here, we report a density functional theory (DFT) investigation of dopamine adsorption on the TiO2(110) surface using the optB86b-vdW functional with a Hubbard-type correction to the Ti 3d orbitals, where U eff = 3 eV. Guided by available X-ray photoelectron spectroscopy (XPS) and near-edge X-ray absorption fine structure (NEXAFS) data, our simulations identify enolate species with bidentate coordination at a submonolayer coverage, which are bonded to two neighboring 5-fold-coordinated Ti atoms at the TiO2(110) surface through both deprotonated oxygen atoms of the dopamine, i.e., in a bridging fashion. The process is highly exothermic, involving an adsorption energy of -2.90 eV. Calculated structural parameters suggest that the molecule sits approximately upright on the surface with the amino group interacting with the π-like orbitals of the aromatic ring, leading to a gauche-like configuration. The resulting NH···π hydrogen bond in this configuration can be broken by overcoming an energy barrier of 0.22 eV; in this way, the amino group rotation leads to an anti-like conformation, making this terminal group able to bind to other biomolecules. This mechanism is endothermic by 0.07 eV. Comparison of existing spectroscopic data with DFT modeling shows that our computational setup can reproduce most experimentally determined parameters such as tilt angles from NEXAFS and chemical shifts in XPS, which allows us to identify the preferred mode of adsorption of dopamine on the TiO2(110) surface.
The modification of the rutile TiO2(110) surface with dopamine represents the best example of the functionalization of TiO2-based nanoparticles with catecholamines, which is of great interest for sunlight harvesting and drug delivery. However, there is little information on the dopamine-TiO2(110) adsorption complex in terms of thermodynamic properties and structural parameters such as bond coordination and orientation of the terminal ethyl-amino group. Here, we report a density functional theory (DFT) investigation of dopamine adsorption on the TiO2(110) surface using the optB86b-vdW functional with a Hubbard-type correction to the Ti 3d orbitals, where U eff = 3 eV. Guided by available X-ray photoelectron spectroscopy (XPS) and near-edge X-ray absorption fine structure (NEXAFS) data, our simulations identify enolate species with bidentate coordination at a submonolayer coverage, which are bonded to two neighboring 5-fold-coordinated Ti atoms at the TiO2(110) surface through both deprotonated oxygen atoms of the dopamine, i.e., in a bridging fashion. The process is highly exothermic, involving an adsorption energy of -2.90 eV. Calculated structural parameters suggest that the molecule sits approximately upright on the surface with the amino group interacting with the π-like orbitals of the aromatic ring, leading to a gauche-like configuration. The resulting NH···π hydrogen bond in this configuration can be broken by overcoming an energy barrier of 0.22 eV; in this way, the amino group rotation leads to an anti-like conformation, making this terminal group able to bind to other biomolecules. This mechanism is endothermic by 0.07 eV. Comparison of existing spectroscopic data with DFT modeling shows that our computational setup can reproduce most experimentally determined parameters such as tilt angles from NEXAFS and chemical shifts in XPS, which allows us to identify the preferred mode of adsorption of dopamine on the TiO2(110) surface.
The
functionalization of TiO2 nanomaterials is of significant
interest to many applications, including photovoltaics,[1] photocatalysis,[2] and
nanomedicine.[3] Organic molecules are commonly
used to modify the surfaces of TiO2 nanostructures to allow
tuning of the band gap of the bare surface via a redshift of the adsorption
band from the UV to the visible range, which is desirable in dye-sensitized
solar cells.[1,4] In addition, TiO2 nanomaterials
can exhibit a high affinity for biological and natural systems once
they are functionalized with organic molecules, including polymers,
proteins, and DNA fragments. Such a functionalization leads to the
development of novel bioinorganic hybrid nanoconjugates,[3,5] which can be used in biomedical applications such as the targeting
of specific cells and multimodal imaging.[6−9]Catecholamines, a family
of organic compounds that have a catechol
and a side-chain amine, are surface modifiers for TiO2 that
provide specific binding sites for biomolecules.[10−12] These compounds
act as a linker with one of the functionals anchoring the surface
of the metal oxide and the other binding the bioactive molecule. Dopamine,
for example, contains a vicinal diol in the catechol-like portion
for surface anchoring and one ethyl–amino group for bioactive
molecule binding. In fact, both functional groups facilitate the charge
transfer between the TiO2 nanomaterial and the biological
component, as evidenced in the work of Liu et al.,[10] where a method to control charge transfer from DNA to TiO2/dopamine is proposed. This type of nanoconjugate has been
considered in gene knockout devices and tumor imaging agents.[13]In order to optimize the syntheses and
applications of dopamine-functionalized
TiO2 nanohybrids, it is desirable to gain a complete atomistic
understanding of the bonding environment of the dopamine adsorbed
on TiO2 surfaces. Most of this knowledge comes from experimental[14] and theoretical[15,16] studies of
the anatase TiO2(101)–dopamine interfaces. The experimental
work of Syres et al.[14] devoted to this
interface has been carried out via X-ray photoelectron spectroscopy
(XPS), ultraviolet photoelectron spectroscopy (UPS), and near-edge
X-ray absorption fine structure spectroscopy (NEXAFS). According to
this work, dopamine bonds through the deprotonated oxygen atoms of
vicinal diols to the five-coordinated titanium atoms at the anatase
TiO2(101) surface, with the plane of the ring at around
90° from the surface. However, the data cannot say whether dopamine
bonds through both oxygens to two neighboring surface Ti atoms (bridging)
or both oxygen atoms in dopamine bonds to a single surface Ti atom
(chelating). Results coming from theoretical investigations, however,
identified the bridging bidentate fashion as the preferred mode of
adsorption for this system.[15,16] Also, thermodynamic
and kinetic aspects, such as adsorption energies and growth conditions,
are covered.[15]Jackman et al.,[17] on the other hand,
studied the adsorption complex of rutile TiO2(110) and
dopamine using XPS and NEXAFS. It was determined that dopamine adsorbs
dissociatively on the rutile TiO2(110) surface following
deprotonation of the alcohol groups in a similar fashion with the
anatase TiO2(101) surface. According to the NEXAFS data
reported in that study, the ring plane of dopamine is tilted 78 ±
5° away from the surface and twisted roughly 11 ± 5°
off the (001) direction. Similarly to the anatase case, the XPS measurements
are not able to distinguish between bridging and chelating modes of
adsorption. The early theoretical study of Castillo et al.[18] determined that dopamine sits approximately
normal to the surface in agreement with ref (17). However, adsorption energies
and the bonding mechanism of the rutile TiO2(110)-dopamine
complex are not reported. Also, the calculations were based around
an intact dopamine, and the possible orientation of the terminal ethyl–amino
group was neglected, which should be considered when considering the
advantages of exploiting a linker with double functional moieties.[6,10,12,13]In this work, we employ density functional theory (DFT) modeling
to gain further insights into the rutile TiO2(110)–dopamine
adsorption complex. Our calculations are based on the experimental
output reported in ref (17), which allows us to make a direct comparison.
Results
and Discussion
Gas-Phase Dopamine
Dopamine belongs
to the catecholamine family whose chemical formula is C6H3(OH)2–CH2CH2NH2. It consists of one amino group attached via an ethyl
chain to a catechol structure—a benzene ring with two hydroxyl
groups. Therefore, it is the simplest possible catecholamine. Dopamine
exhibits high flexibility, which results in a significant number of
conformations. Cabezas et al.[19] performed
a detailed conformational search of dopamine in the gas phase (where
it adopts a neutral form) employing laser-ablation molecular-beam
Fourier transform microwave (LA-MB-FTMW) spectroscopy in combination
with Møller–Plesset second-order perturbation method (MP2)
simulations. A total of 18 candidates were proposed for the dopamine
molecule, which are divided into two groups according to the orientation
of the side-chain amine: gauche (G) and anti (A). Of these, seven
conformers were observed in the gas phase by the spectroscopic technique,
all of them corresponding to a gauche-type configuration.We
only considered the lowest-energy configuration of gas-phase dopamine
from the above groups to be calculated with our computational setup. Figure displays the spatial
configuration of the two conformers after optimization. Dopamine in
the gas phase is stabilized by a NH···π interaction
between the amino group and the π-orbitals of the aromatic ring,
which, judged by the N-O1 distance whose value is 6.354 Å, results
in a folded structure (Conformer G). When dopamine is extended (Conformer
A, N-O1 distance = 7.857 Å) such that this polar intramolecular
interaction is not present anymore, the relative energy decreases
by 0.07 eV. Our result compares very well with the relative energies
at the MP2 level reported in ref (19), which was estimated as 0.07 eV (526 cm–1). The PBE functional, on the other hand, predicts
that Conformer A is more stable than Conformer G by 0.63 eV, which
is expected since weak hydrogen bonding is not properly accounted
within this approach.
Figure 1
Molecular structure of the lowest-energy conformers of
gaseous
dopamine, according to the optB86b-vdW functional. Refer to Table S1 for numerical values of the bond lengths
and angles. The white, black, blue, and red spheres denote the H,
C, N, and O atoms, respectively.
Molecular structure of the lowest-energy conformers of
gaseous
dopamine, according to the optB86b-vdW functional. Refer to Table S1 for numerical values of the bond lengths
and angles. The white, black, blue, and red spheres denote the H,
C, N, and O atoms, respectively.The existence of stabilizing the NH···π hydrogen
bond envisaged by the optB86b-vdW functional has been confirmed by
LA-MB-FTMW via 14N nuclear quadrupole coupling interactions.[19] This weakly polar intramolecular interaction
is the force that drives the conformational preference not only in
gas-phase dopamine but also in other neurotransmitters like 2-phenylethylamine[20] and serotonin.[21]Since Conformer G is the most stable configuration, we use it in eq as the reference for the
calculation of adsorption energies. For the other two tested functionals,
we selected the lowest-energy configuration of dopamine in each situation
regardless of the order of stability. In any case, the selection of
reference is largely arbitrary as our focus is the relative stability
of the different adsorption configurations.
Relaxations
in the Clean TiO2(110)
Surface
Rutile TiO2(110) surface termination exhibits
both titanium and oxygen species with two different types of coordination,
as illustrated in Figure . Along the (001) direction, rows of 6-fold-coordinated Ti
atoms (Ti6f) alternate with 5-fold-coordinated Ti atoms
(Ti5f) separated by rows of O species, which are 3-fold
coordinated as in the bulk and commonly referred as in-plane O atoms
(Oip). The former of the Ti atoms are covered by rows of
two-fold-coordinated O species or bridging O atoms (Obr), whereas the latter are exposed to the surroundings. Upon relaxation,
the two types of oxygen atoms and the Ti6f species move
toward the vacuum region, which is a positive displacement. In contrast,
the Ti5f atoms exhibit a negative displacement (i.e., they
move toward the bulk). Such relaxations cause a rumpling of the in-plane
layer.
Figure 2
Schematic representation of the TiO2(110) surface illustrating
the 5- and 6-fold-coordinated Ti species together with the in-plane
and bridging O atoms. Ball-and-stick (line) style depicts the relaxed
(frozen) part of the asymmetric slab model used in this study. Red
and gray colors correspond to O and Ti atoms, respectively.
Schematic representation of the TiO2(110) surface illustrating
the 5- and 6-fold-coordinated Ti species together with the in-plane
and bridging O atoms. Ball-and-stick (line) style depicts the relaxed
(frozen) part of the asymmetric slab model used in this study. Red
and gray colors correspond to O and Ti atoms, respectively.In Table , we present
the calculated displacements predicted by the optB86b-vdW functionals
contrasted with available experimental data as reported by quantitative
low energy electron diffraction (LEED-IV),[22] surface X-ray diffraction (SXRD),[23] and
scanned-energy mode photoelectron diffraction (PhD).[24] In general, our calculations are qualitatively consistent
with the three sets of experiments, even considering the significant
error values estimated in the PhD study. In this context, comparison
has been made around LEED-IV and SXRD. According to Table , the downward displacement
of the Ti5f layer and the upward relaxation of the Oip species are in excellent agreement with both experimental
studies, particularly with those determined by SXRD. The calculated
values for the positive relaxations of both the Ti6f and
Obr atoms are a little shorter than those estimated by
LEED-IV and SXRD measurements, where a good agreement is seen between
the two sets of results. The only significant difference between our
simulations and the experiment accounted by LEED-IV and SXRD lies
in the magnitude of the positive displacement of the Obr layer. Both experimental techniques determined a value of 0.10 Å,
while the optB86b-vdW functional predicts an upward shift of 0.02
Å. However, this tiny displacement is consistent with that from
the optB88-vdW functional as reported by Tillotson et al.,[25] where parameter Ueff = 3 eV was applied for the 3d states as well (see Table ). We can see that although
the performance of these two nonlocal functionals is similar (as their
exchange parts are closely defined), the optB86b-vdW functional provides
slightly better results at reproducing relaxations in the TiO2(110) surface, especially when comparing with SXRD results.[23] This conclusion was also attained in ref (26) on studying atomic displacements
in this surface with different nonlocal functionals but without including
any Hubbard-type correction.
Table 1
Calculated Atomic
Displacements (Å)
along the (110) Direction in Comparison with Available Experimental
Dataf
optB86b-vdW
optB88-vdW
LEED-IVc
SXRDd
PhDe
Ti6f
0.19, 0.34a
0.40,a 0.17b
0.25 ± 0.03
0.25
± 0.01
0.19 (−0.15/+0.10)
Ti5f
–0.12, −0.18a
–0.15,a −0.15b
–0.19
± 0.05
–0.11 ± 0.01
–0.26
± 0.08
Oip
0.17, 0.18a
0.22,a 0.14b
0.27
± 0.08
0.17 ± 0.03
0.00 (−0.40/+0.15)
Obr
0.02, 0.15a
0.20,a 0.01b
0.10 ± 0.05
0.10
± 0.04
0.17 ± 0.15
Reference (26) (Ecutoff = 700 eV, without Hubbard correction).
Reference (25) (Ecutoff = 400 eV, Ueff = 3 eV).
Reference (22).
Reference (23).
Reference (24).
Previous theoretical work on these
parameters is also contrasted. Positive and negative value displacements
indicate upward and downward relaxations, respectively. For atom illustrations,
see Figure .
Reference (26) (Ecutoff = 700 eV, without Hubbard correction).Reference (25) (Ecutoff = 400 eV, Ueff = 3 eV).Reference (22).Reference (23).Reference (24).Previous theoretical work on these
parameters is also contrasted. Positive and negative value displacements
indicate upward and downward relaxations, respectively. For atom illustrations,
see Figure .Since optB86b-vdW provides a robust
description of both the adsorbate
and the substrate, we used it here to study the dopamine-TiO2(110) adsorption complex at an atomistic level.
Exploration of the Configurational Space for
the Dopamine–TiO2(110) Adsorption Complex
Similar to catechol, the hydroxyl groups in dopamine are susceptible
to deprotonation, yielding dopamine enolates plus one or two protons.
On the basis of the acid–base adsorption mechanism on metal
oxides,[27] oxygen atoms of the adsorbate
can form bonds with the acidic sites of the substrate (cations) while
the protons of the molecule interact with the basic surface sites
(anions). In this case, oxygens in the dopamine enolate bind to unsaturated
Ti atoms (Ti5f), and protons move to the low-coordinated
oxygens (Obr) of the TiO2(110) surface. Depending
on the number of hydroxyl groups being deprotonated, the whole process
can result into two dissociative adsorption modes: monodentate (only
one oxygen binds to the surface) and bidentate (both oxygens form
bonds with the substrate). As reported in ref (17), XPS measurements determined
(i) the presence of deprotonated species only at a sub-monolayer regime
and (ii) dopamine bonds in a bidentate fashion. Therefore, we only
considered bidentate modes of adsorption, placing the two protons
as far as possible from the adsorption sites (refer to Supporting Information for further analysis).We did not consider configurations where dopamine bends toward
the surface to allow interaction of the NH2 group with
the surface as reported in the recent theoretical investigation by
Ronchi et al.,[15] who studied dopamine adsorption
on anatase TiO2(101) surfaces at low coverages. In this
system, the topology of the substrate facilitates this additional
interaction between the terminal ethyl–amino group (via the
N atom) and a Ti5f species located at the underlying sawtooth-like
structure.[28] This might not be the case
for the rutile TiO2(110) surface. Indeed, the available
NEXAFS data at a sub-monolayer regime reported in ref (17) clearly indicates that
the angle for the π* vector-like orbitals is almost parallel
to the surface, which means that dopamine sits approximately normal
to the surface. Thus, it is unlikely to see deprotonated dopamine
motifs bending toward the rutile TiO2(110) surface to promote
such an interaction, at least not at the experimental conditions referenced
in this study, which guided our investigation.The configurational
space of dissociative adsorption in a bidentate
fashion comprises two modes: bridging (each oxygen in dopamine bonded
to neighboring Ti5f atoms) and chelating (both oxygen atoms
bonding to a single Ti5f atom). We also considered both
conformers (gauche and anti) of dopamine in the gas phase. In total,
four configurations were generated, which, after geometry optimization,
are depicted in Figure . According to our simulations, the adsorption of dopamine on TiO2(110) surfaces is highly exothermic for all four candidates,
with adsorption energies ranging from −1.40 to −2.90
eV. In bridging and chelating fashions, gauche (G) and anti (A) configurations
have similar adsorption energies which could mean that from a thermodynamical
point of view, both structures are allowed to coexist/compete and
that overall, bridging modes of adsorption are more favorable than
those adopting a chelating configuration.
Figure 3
Adsorption configurations
of dopamine over the TiO2(110)
surface considered in the present study. The candidates illustrated
here were optimized within the optB86b-vdW approach. Final geometries
via the optB88-vdW and PBE functionals were essentially the same.
Refer to Table S2 in Supporting Information
for the calculated values from the optB88-vdW and PBE simulations.
Oxygen and carbon atoms are numbered in line with Figure and with the results of core-level
shift calculations listed in Table .
Adsorption configurations
of dopamine over the TiO2(110)
surface considered in the present study. The candidates illustrated
here were optimized within the optB86b-vdW approach. Final geometries
via the optB88-vdW and PBE functionals were essentially the same.
Refer to Table S2 in Supporting Information
for the calculated values from the optB88-vdW and PBE simulations.
Oxygen and carbon atoms are numbered in line with Figure and with the results of core-level
shift calculations listed in Table .
Table 3
Relative Chemical Shifts in the O
1s and C 1s Binding Energies of Dopamine Adsorbed on the TiO2(110) Surfaceb
Bridging G
Bridging A
Chelating G
Chelating
A
XPSa
ΔBE (O1)
0.0
0.0
0.0
0.0
0.0
ΔBE (O2)
0.0
0.0
0.0
0.0
0.0
ΔBE (C1)
1.5
1.4
1.2
1.1
1.9
ΔBE (C2)
1.5
1.5
1.2
1.2
1.9
ΔBE (C3)
0.0
0.0
0.0
0.0
0.0
ΔBE (C4)
0.3
0.3
0.3
0.3
0.6
ΔBE (C5)
0.2
0.1
0.2
0.1
0.0
ΔBE (C6)
0.0
0.0
0.1
0.0
0.0
ΔBE (C7)
1.9
1.9
1.9
1.9
0.6
ΔBE (C8)
3.0
3.0
3.2
3.1
1.6
Ref (17).
Values were obtained with the optB86b-vdW
functional. See Figure for atom numbering.
This general trend is
also observed with the optB88-vdW and PBE
functionals, as seen in Table S2 of the
Supporting Information. The relative values within the optB88-vdW
(optB86b-vdW) approach indicate that “Bridging G” is
more stable than “Bridging A” by only 0.03 (0.07) eV,
while “Chelating G” and “Chelating A”
differ by 0.04 (0.02) eV in the same order of stability. Considering
the lowest-energy configuration in each case, bridging is favored
over chelating by 1.45 (1.48) eV. Similar relative values were obtained
by the standard PBE functional: “Bridging G” > “Bridging
A” by 0.03 eV, “Chelating G” > “Chelating
A” by 0.01 eV, and bridging > chelating by 1.28 eV. Therefore,
our results are largely consistent among the DFT functionals considered
in the present study.However, PBE calculates lower values for
the adsorption energy
of dopamine over the TiO2(110) surface than both nonlocal
functionals. According to Table S2, the
adsorption energy of the most stable configuration computed by the
PBE functional is −1.95 eV, which is significantly much lower
than those from optB86b-vdW (−2.90 eV) and optB88-vdW (−2.83
eV) functionals. On average, the inclusion of dispersion in terms
of nonlocal correlation increases the strength of dopamine adsorption
onto the TiO2(110) surface by ∼0.9 eV. A significant
contribution of vdW interactions to the adsorption energy has been
also observed for the dissociative adsorption of small organic molecules
on this surface, like formic acid and glycine, with calculated values
up to ∼0.6 eV.[25] However, these
adsorption energies might be overestimated due to the significant
differences between experiment and theory, as found in the case of
methanol.[25,26] In any case, our results show that the order
of stability is the same even without the inclusion of vdW effects
in the simulations, which suggests that chemistry dominates in the
dopamine-TiO2(110) adsorption complex.Overall, the
most important result in this section is that, according
to Figure , Bridging
G is rendered as the most stable configuration among the four candidates.
Owing to the number of contacts present, bridging bidentate configurations
were a priori presumed to be the preferable mode of adsorption for
dopamine over the rutile TiO2(110) surface. Actually, such
configurations have been determined for oxygen-legged compounds adsorbed
on this TiO2 surface,[28,29] including
catechol[30,31] and benzoate.[32] Nevertheless, it is noteworthy to point out two facts. First, all
candidates feature very negative adsorption energies and therefore
could represent local minima in the potential energy landscape, and
second, the tiny difference in energy between “Bridging G”
and “Bridging A” configurations makes difficult the
task of making an unambiguous discrimination based on adsorption energies
alone; it is likely that both candidates coexist with a small transition
barrier between them. Consequently, we need to refer to available
experimental data in comparison with our DFT results in order to make
a reliable determination of the adsorption complex.
Comparison of DFT Modeling with Available
Experimental Data
As illustrated in Figure , we determined the tilt angles of the benzene
ring with respect to the surface plane (α) and with respect
to the row of bridging oxygen atoms along the (001) direction (β).
In the experimental work by Jackman et al.,[17] angle-resolved NEXAFS spectra determined both angles as α
= 78° and β = 11° (with a margin of error of 5°),
which indicate the dopamine sits almost upright on the surface and
slightly twisted with respect to the (001) direction. According to
our simulations as summarized in Table , the α value is best reproduced in the “Bridging
G” configuration, where α is off by 1° with respect
to the experiment. In relation to the β parameter, “Chelating
G” exhibits the best degree of agreement; in this case, β
is perfectly reproduced by our simulations. In any case, the α
and β values for both bridging modes and the “Chelating
G” configuration are within the confidence interval of the
experimental measurements, which implies that these tree configurations
cannot be ignored. However, this is not the case for the remaining
candidate, “Chelating A,” where it is possible to see
that both structural parameters are not compatible with the NEXAFS
data. Thus, on the grounds of molecular orientation, we can only exclude
the “Chelating A” configuration with reasonable confidence.
Figure 4
Schematic
representation of adsorbed dopamine on the TiO2(110) surface,
defining the tilt angles α and β. Both
are given with respect to the plane of the benzene ring.
Table 2
Key Structural Parameters of the Four
Candidates as Determined by the optB86b-vdW Functionalb
parameters
Bridging G
Bridging A
Chelating G
Chelating A
NEXAFSa
α
77°
81°
80°
86°
78 ± 5°
β
13°
9°
11°
5°
11 ± 5°
d(O1–Ti)
1.862 Å
1.859 Å
1.984 Å
1.959
Å
d(O2–Ti)
1.868 Å
1.868 Å
2.014
Å
2.054 Å
∠N–C8–C7–ring
63°
175°
63°
174°
Ref (17).
For
numbering, refer to Figure .
Schematic
representation of adsorbed dopamine on the TiO2(110) surface,
defining the tilt angles α and β. Both
are given with respect to the plane of the benzene ring.Ref (17).For
numbering, refer to Figure .In addition to
the tilt angles, we also computed the core-level
shifts in the final state approximation, which can be contrasted against
the binding energy (BE) shifts from the XPS data reported in ref (17). The recent work by Trinh
et al.[33] demonstrated a synergistic application
of XPS and DFT + U methods to allow the identification of surface
adsorbates on transition metal oxides and assignment of their respective
XPS peaks. Moreover, this work suggested that the agreement between
XPS and core-level shift calculations within the DFT + U approach
is highly sensitive to the choice of the U parameter,
which should be determined based on surface-dependent properties (like
SXRD and XPS) rather than bulk properties. For the dopamine-TiO2(110) system, Ueff = 3 eV seems
to be a reasonable choice to capture most of the XPS features of the
C 1s core levels, especially those arising from the benzene ring (C1–6),
which were considered here to discriminate between bridging and chelating
configurations as discussed further below.Table lists the calculated core-level shift values within
the final state approximation for all candidates. The predicted relative
shifts for the O 1s BEs are the same for all geometries, which is
expected since the anchoring O atoms are in the same chemical environment,
in turn making the task of discerning between bridging and chelating
geometries difficult. On the other hand, C 1s BEs result in small
shifts that allow us to make a reasonable discrimination. According
to XPS data,[17] the C 1s photoemission peaks
of C3, C5, and C6 indicate that they all have low BEs; so do the DFT
values for all remaining candidates (even for “Chelating A,”
which was already discarded from the NEXAFS analysis). The C4 in all
of them is shifted to a higher BE, which is also seen in the experimental
data. The highest chemical shift in the C 1s BEs is experienced by
C1 and C2 as reported by XPS. This shift is also seen in the tested
geometries optimized with the optB86b-vdW functional, although its
magnitude is off by ∼0.4 eV in the bridging fashion and ∼0.8
eV in the chelating fashion when comparing with XPS values. In relation
to C7 and C8, they are also shifted to high BEs, but their sizes are
not well reproduced by our simulations which, contrary to the experiment,
are off by ∼1.3 and ∼1.4 eV, respectively.Ref (17).Values were obtained with the optB86b-vdW
functional. See Figure for atom numbering.Note
that none of the candidates is compatible with the available
XPS data for the ethyl chain (C7 and C8). Considering the electronegativity
of C, N, and O, C7 (H2C–CH2NH2) should be shifted to a much lower C 1s BE, and C8 (H2C–NH2) should be shifted to a slightly lower C
1s BE compared to those of C1 and C2 (C–O). In fact, for the
most stable configuration (Bridging G), this succession is roughly
seen in the core-level shift calculations within the initial state
approximation (Table S3), which only considers
shifts arising from the change in the local environment of atoms.
However, when core-hole screening contributions are incorporated as
described in the final state calculations, both C7 and C8 are shifted
to higher BEs compared to those of C1 and C2 (Table ). It is clear that the energy relaxation
due to the screening of the core hole left behind during the photoemission
process dominates the chemical shifts in the ethyl chain (i.e., final
state effects). We have checked that these chemical shifts are not
associated to electron density redistribution upon adsorption: our
Bader analysis for “Bridging G” shows that the net atomic
charge for C7 and C8 in adsorbed dopamine remains the same despite
the charge transfer occurring from adsorbate to substrate, which is
calculated as 0.45 e (Table S4). It is likely that the assignment of the fitted peaks to the ethyl
chain in the XPS spectrum of C 1s for dopamine adsorbed on the rutile
TiO2(110) surface was based on a negligible contribution
from the final state effects, which might explain the discrepancy
between experiment and theory regarding the relative chemical shifts
in the C 1s BEs for C7 and C8. Moreover, such a spectrum displays
a broad and complex line shape that does not allow a straightforward
assignment and presumably a unique multiple-peak fitting (see Figure in ref (17)). C1 1s spectra recorded
for the adsorption of biomolecules over transition metals also exhibit
a high degree of complexity, with multiple features coming from dissociation
products formed upon adsorption, and are therefore difficult to resolve.[34−36]Regarding the benzene ring (C1–6), Table S3 shows that the core-level shift values obtained with the
initial and final state approaches are similar. The similarity between
the two results implies that the character of the valence electron
charge distribution (i.e., initial state effects) dominates the relative
chemical shifts in the C 1s BEs. This correlation is important for
the discrimination between bridging and chelating configurations because
final state calculations can be directly compared with XPS measurements.
Consequently, we focus our core-level shift analysis on the benzene
ring. According to Table , in all candidates, the calculated core-level shifts in the
final state approximation for C3, C5, and C6 (C–H) as well
as C4 (C–CH2CH2NH2) compare
well with those from XPS. On the other hand, bridging configurations
are in much better agreement with the experiment than their chelating
counterparts regarding C1 and C2 (C–O). In other words, the
comparison of experimental chemical shifts in the C 1s BEs with the
theoretical values of our simulations suggests that the relative chemical
shifts of the benzene ring (C1–6) are best reproduced in both
bridging modes. Better yet, these configurations are also compatible
with NEXAFS measurements as discussed above. Therefore, from this
combined analysis, both chelating modes can be safely ignored as candidates.
Analysis of the Bonding Mode of the Dopamine
Adsorbed on the TiO2(110) Surface
At this point,
it is still difficult to distinguish between “Bridging G”
and “Bridging A” candidates with rational certainty
since they both (i) are essentially isoenergetic and (ii) agree with
available spectroscopic data. In order to understand the relationship
between both bridging configurations, we investigated the transition
from one to the other by means of the nudged band elastic (NEB) method
(see Figure ). The
energy difference between “Bridging G” and “Bridging
A” is 0.07 eV and can be associated with the strain energy
of the “Bridging A” configuration. The two local minima
are separated by an energy barrier of 0.22 eV, which means that the
“Bridging G” configuration is the global minimum in
the potential energy surface. The dihedral angle that determines the
conformation of the side chain (∠N–C8–C7–ring)
for the predicted transition state is 123°, which is roughly
the average of the calculated values for “Bridging G”
and “Bridging A” (see Table ). From a kinetic point of view, it is possible
to convert “Bridging G” (nonactivated structure) into
“Bridging A” (activated structure) by overcoming this
energetic barrier, which could be achieved under different experimental
conditions and even at room temperature.[31] In this way, the NH···π hydrogen bond can be
broken and dopamine might adopt an extended configuration, allowing
the amino group to be ready to form hydrogen bonds with another system.
After all, dopamine can be seen as a linker with double functional
moieties: one anchoring the TiO2(110) surface and the other
binding a bioactive molecule.[3]
Figure 5
Nudged elastic
band energy profile for converting Bridging G into
Bridging A, as calculated with the optB86b-vdW functional.
Nudged elastic
band energy profile for converting Bridging G into
Bridging A, as calculated with the optB86b-vdW functional.As a final remark, the adsorption of dopamine over the rutile
TiO2(110) surface seems to be stronger than the case of
catechol,
the archetype of 1,2-dihydroxybenzene ligands. Within the PBE approximation,
Li et al.[30] estimated the adsorption energy
for low coverages (0.25 ML) of catechol adsorbed over the TiO2(110) surface as −1.05 eV. For the dopamine–TiO2(110) system in its most stable configuration, “Bridging
G,” our calculated PBE value (at a coverage of 0.125 ML) is
−1.95 eV (see Table S2). This observation
is also seen in the case of the anatase TiO2(101) surface.[15] It is likely that this difference in adsorption
energies arises from the presence of the amine side chain in the dopamine
molecule, which also causes the dopamine to tilt away from the surface
plane almost in an upright geometry.[14,17] Future research
is in sight to evaluate the effect of other side-chain amines on the
adsorption of catecholamines onto these surfaces.
Conclusions
In summary, we performed DFT + U simulations
to gain insights into
the adsorption of dopamine on the rutile TiO2(110) surface.
To this purpose, we used the optB86b-vdW functional with the Ueff parameter set to 3 eV for the Ti 3d states.
Our simulations indicate that dopamine is adsorbed dissociatively
on the TiO2(110) surface, following an acid–base
adsorption mechanism:[27] deprotonated oxygens
in the adsorbate bind to unsaturated Ti atoms, whereas protons move
to the low-coordinated oxygens of the substrate. The adsorption process
is highly exothermic by as much as −2.90 eV, and results in
the formation of dopamine enolate species with bidentate coordination
at the TiO2(110) surface. According to our calculations,
bridging (oxygens bonded to two adjacent surface Ti atoms) is more
favorable than chelating (both oxygen atoms bonding to a single Ti)
by 1.48 eV for the adsorption of dopamine on the TiO2(110)
surface. The preference in the mode of adsorption for this system,
bridging bidentate, suggested by the optB86b-vdW functional is also
predicted by optB88-vdW and PBE, which demonstrates that our results
are robust with respect to the choice of functional.“Bridging
G” is the lowest-energy configuration found
in this theoretical work. In this geometry, the amino group interacts
with the π-like orbitals of the benzene ring of the catechol-like
part of dopamine, leading to a gauche-like configuration. An energy
barrier of 0.22 eV is required to convert “Bridging G”
into “Bridging A,” in which the amino group is aligned
with the ethyl chain axis leading to an anti-like conformation. This
mechanism is endothermic by 0.07 eV and might allow the dopamine-functionalized
TiO2 nanomaterial to form hydrogen bonds with bioactive
molecules via the terminal ethyl–amino group.The calculated
tilt angles for the “Bridging G” configuration
are α = 77° and β = 13°, which are in excellent
agreement with the NEXAFS analysis reported in ref (17) (78 ± 5° and
11 ± 5°, respectively). Additionally, the computed chemical
shifts in the C 1s levels of the aromatic ring are in line with the
XPS data reported in the same study, which can be seen in detail in Table . According to our
core-level shift analysis based on initial and final state approximations,
such chemical shifts are determined by initial state effects. Our
DFT calculations also indicate that final state effects dominate the
chemical shifts in the C 1s BEs in the ethyl chain.Our results
demonstrates that the optB86b-vdW functional, with
a proper Hubbard-U term, is also able to reproduce
most of the experimental features of the clean TiO2(110)
surface accounted by LEED-IV[22] and SXRD[23] and those of the dopamine-TiO2(110)
adsorption complex obtained via XPS and NEXAFS,[17] as evidenced in the present investigation.
Computational Methods
We performed periodic DFT calculations
using the plane-wave code
VASP.[37,38] The interaction between the valence electrons
and the core was treated within the projected augmented wave (PAW)
method,[39,40] keeping the core electrons (1s in C, N,
and O and up to 3p in Ti) frozen in the atomic reference configurations.
The plane-wave basis in the simulations was truncated at a kinetic
energy cutoff of 400 eV, which is the recommended value for the employed
PAW potentials. To sample the Brillouin zone, we employed Monkhorst–Pack
grids[41] with a maximum separation of 0.25
Å–1 between k-points throughout the simulations.
This grid density, which was found enough for convergence of the bulk
rutile total energy, corresponds to 6 × 6 × 9 for the reciprocal
space of the bulk.The rutile TiO2(110) surface was
represented by a periodic
slab of four O–Ti–O trilayers, which has been widely
used in previous theoretical work of molecular adsorption on this
metal-oxide surface.[26,30,42,43] Furthermore, this model appears to be enough
in order to achieve convergence on adsorption energies with respect
to slab thickness.[25] Only the two uppermost
trilayers (together with the adsorbate) were fully relaxed, whereas
the two bottom ones were fixed in their optimized bulk positions;
this procedure accelerates the convergence of calculated surface properties
with respect to the thickness of the simulation slab.[25,44] The threshold for forces acting on ions during geometry optimizations
was set to 0.01 eV Å–1. Since we employed the
asymmetric slab model, all simulations included a dipole correction
as implemented in VASP based on a method proposed by Makov and Payne.[45] In our simulations, a vacuum gap of 20 Å
separates each slab from its periodic images. Laterally, the supercell
consisted of (4 × 2) surface unit cells; therefore, the adsorption
of one dopamine molecule for every supercell corresponds to a surface
coverage of 0.125 ML. This low coverage allows us to focus on the
direct adsorbate–surface interactions rather than lateral interactions.
Moreover, spectroscopic output reported in ref (17) was obtained at a sub-monolayer
regime, which allows us also to make a much more reliable comparison
with the experiment. For the simulation of the gas-phase dopamine,
we used a large periodic cage, ensuring that each molecule is separated
from its replicas by at least 12 Å.We obtained geometries
and total energies using the optB86b-vdW
functional, where the dispersion is treated with explicit nonlocal
correlation[46] as developed and implemented
in VASP by Klimeš et al.[47] Output
with both the generalized gradient approximation (GGA) in the form
of the Perdew–Burke–Ernzerhof (PBE) exchange-correlation
functional[48] and with the optB88-vdW functional[46] leads to essentially the same results in terms
of relative adsorption energies for different configurations as discussed
further below. For partly counteracting the artificial delocalization
that results from the spurious electron self-interaction in DFT,[49] we applied a Hubbard-type correction[50] to the Ti 3d orbitals where parameter Ueff = 3 eV in both the nonlocal and semilocal
functionals. This value has been commonly used in some previous theoretical
studies of rutile[51,52] and anatase,[53,54] and as discussed below, it allows a rational description of most
of the structural properties of the clean substrate as well as the
O 1s and C 1s core levels of the adsorption complex.For each
adsorption configuration considered in the present investigation,
we calculated the adsorption energy EadsDFT of dopamine
on the TiO2(110) surface as follows:where Eslab + molecule is the energy of the
optimized substrate–adsorbate
system, Eslab denotes the energy of the
relaxed clean TiO2(110) surface, and Emolecule corresponds to the energy of the gas-phase (intact)
dopamine molecule at the lowest-energy configuration.Finally,
our core-level shift calculations were performed within
the so-called final state approximation.[55] The core-level shifts obtained with this approach are estimated
as total energy differences between two separate calculations as reported
in ref (56). This procedure
does not take into account the effect of core–electron screening;
however, screening by valence electrons is included. Since this approximation
does not yield correct absolute values for the core-level binding
energies,[56] core-level shifts, ΔBECL(A), must be considered instead. Such shifts are defined
as the difference in binding energy of specific core-electrons BECL between an atom A and a reference atom Aref:We focused our discussion on the relative shifts
of the C 1s levels
of the carbon atoms of the adsorbed dopamine molecule, although O
1s level are also reported. In our investigation, we selected as reference
atom the one yielding the lowest core-level binding energy in each
case.
Authors: Tatjana Paunesku; Tijana Rajh; Gary Wiederrecht; Jörg Maser; Stefan Vogt; Natasa Stojićević; Miroslava Protić; Barry Lai; Jeremy Oryhon; Marion Thurnauer; Gayle Woloschak Journal: Nat Mater Date: 2003-05 Impact factor: 43.841