Literature DB >> 35154851

In-vitro study on the identification of gastrointestinal stromal tumor tissues using laser-induced breakdown spectroscopy with chemometric methods.

Bushra Sana Idrees1,2, Qianqian Wang1,2,3, M Nouman Khan1,2, Geer Teng1,2,3, Xutai Cui1,2, Wenting Xiangli1,2, Kai Wei1,2.   

Abstract

Early-stage detection of tumors helps to improve patient survival rate. In this work, we demonstrate a novel discrimination method to diagnose the gastrointestinal stromal tumor (GIST) and its healthy formalin fixed paraffin embedded (FFPE) tissues by combining chemometric algorithms with laser-induced breakdown spectroscopy (LIBS). Chemometric methods which include partial least square discrimination analysis (PLS-DA), k-nearest neighbor (k-NN) and support vector machine (SVM) were used to build the discrimination models. The comparison of PLS-DA, k-NN and SVM classifiers shows an increase in accuracy from 94.44% to 100%. The comparison of LIBS signal between the healthy and infected tissues shows an enhancement of calcium lines which is a signature of the presence of GIST in the FFPE tissues. Our results may provide a complementary method for the rapid detection of tumors for the successful treatment of patients.
© 2021 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Entities:  

Year:  2021        PMID: 35154851      PMCID: PMC8803043          DOI: 10.1364/BOE.442489

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  23 in total

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Authors:  Douglas M Hawkins
Journal:  J Chem Inf Comput Sci       Date:  2004 Jan-Feb

2.  In vivo detection of epithelial neoplasia in the stomach using image-guided Raman endoscopy.

Authors:  Zhiwei Huang; Seng Khoon Teh; Wei Zheng; Kan Lin; Khek Yu Ho; Ming Teh; Khay Guan Yeoh
Journal:  Biosens Bioelectron       Date:  2010-08-06       Impact factor: 10.618

Review 3.  Prospects for laser-induced breakdown spectroscopy for biomedical applications: a review.

Authors:  Vivek Kumar Singh; Awadhesh Kumar Rai
Journal:  Lasers Med Sci       Date:  2011-04-28       Impact factor: 3.161

Review 4.  Partial least squares-discriminant analysis (PLS-DA) for classification of high-dimensional (HD) data: a review of contemporary practice strategies and knowledge gaps.

Authors:  Loong Chuen Lee; Choong-Yeun Liong; Abdul Aziz Jemain
Journal:  Analyst       Date:  2018-07-23       Impact factor: 4.616

5.  Optical biopsy and imaging using optical coherence tomography.

Authors:  J G Fujimoto; M E Brezinski; G J Tearney; S A Boppart; B Bouma; M R Hee; J F Southern; E A Swanson
Journal:  Nat Med       Date:  1995-09       Impact factor: 53.440

6.  A Raman-based serum constituents' analysis for gastric cancer diagnosis: In vitro study.

Authors:  Maryam Bahreini; Ahmad Hosseinzadegan; Arian Rashidi; Seyed Rouhollah Miri; Hamid Reza Mirzaei; Parastoo Hajian
Journal:  Talanta       Date:  2019-06-19       Impact factor: 6.057

7.  Sensitivity, Specificity, and Predictive Values: Foundations, Pliabilities, and Pitfalls in Research and Practice.

Authors:  Robert Trevethan
Journal:  Front Public Health       Date:  2017-11-20

8.  Annual Report to the Nation on the Status of Cancer, 1975-2014, Featuring Survival.

Authors:  Ahmedin Jemal; Elizabeth M Ward; Christopher J Johnson; Kathleen A Cronin; Jiemin Ma; Blythe Ryerson; Angela Mariotto; Andrew J Lake; Reda Wilson; Recinda L Sherman; Robert N Anderson; S Jane Henley; Betsy A Kohler; Lynne Penberthy; Eric J Feuer; Hannah K Weir
Journal:  J Natl Cancer Inst       Date:  2017-09-01       Impact factor: 13.506

9.  Incidence of Gastrointestinal Stromal Tumors in the United States from 2001-2015: A United States Cancer Statistics Analysis of 50 States.

Authors:  Nicolas Patel; Bikramjit Benipal
Journal:  Cureus       Date:  2019-02-22

10.  Methodology for the Implementation of Internal Standard to Laser-Induced Breakdown Spectroscopy Analysis of Soft Tissues.

Authors:  Anna Šindelářová; Pavel Pořízka; Pavlína Modlitbová; Lucie Vrlíková; Kateřina Kiss; Milan Kaška; David Prochazka; Jakub Vrábel; Marcela Buchtová; Jozef Kaiser
Journal:  Sensors (Basel)       Date:  2021-01-29       Impact factor: 3.576

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