| Literature DB >> 35154388 |
Charlie W Lees1, J Jasper Deuring2, Michael Chiorean3, Marco Daperno4, Gianluca Bonfanti5, Rebecca Germino6, Pritha Bhadra Brown6, Irene Modesto6, Roger A Edwards7.
Abstract
INTRODUCTION: Tofacitinib is an oral, small molecule Janus kinase inhibitor for the treatment of ulcerative colitis (UC). Outcome prediction based on early treatment response, along with clinical and laboratory variables, would be very useful for clinical practice. The aim of this study was to determine early variables predictive of responder status in patients with UC treated with tofacitinib.Entities:
Keywords: inflammation; outcomes research; statistics; symptom score or index; ulcerative colitis
Year: 2021 PMID: 35154388 PMCID: PMC8832332 DOI: 10.1177/17562848211054710
Source DB: PubMed Journal: Therap Adv Gastroenterol ISSN: 1756-283X Impact factor: 4.409
Reduced list of variables incorporated into the final models.
| Variables in the final models |
|---|
| Partial Mayo score at baseline, Week 2, and Week 4 |
| Partial Mayo subscores at baseline, Week 2, and Week 4 |
| Stool frequency |
| Rectal bleeding |
| Physician Global Assessment |
| Laboratory variables at baseline and Week 4 |
| Total cholesterol (mg/dL) |
| C-reactive protein (mg/dL) |
Measures and corresponding time points from which the variables used in the models were derived are shown. Variables used in the models were the values themselves, their differences from the baseline value, monotonicity (for partial Mayo score only), and path length (for partial Mayo score only).
Summary of all AUROC values from logistic regression and random forest analyses using the reduced list of variables and a training/testing split dataset or a cross-validation protocol to predict either 2- or 3-point partial Mayo score responder status at Weeks 4 or 8.
| Week 8 prediction of response using baseline, Week 2, and Week 4 data | Week 8 prediction of response using baseline and Week 2 data | Week 4 prediction of response using baseline and Week 2 data | ||||
|---|---|---|---|---|---|---|
| Logistic regression | Random forest | Logistic regression | Random forest | Logistic regression | Random forest | |
| Training/testing split dataset | ||||||
| 2-point response | 0.87 | 0.85 | 0.78 | 0.74 | 0.86 | 0.84 |
| 3-point response | 0.87 | 0.85 | 0.79 | 0.78 | 0.87 | 0.84 |
| Cross-validation protocol | ||||||
| 2-point response | 0.88 | 0.86 | 0.78 | 0.76 | 0.86 | 0.83 |
| 3-point response | 0.87 | 0.85 | 0.78 | 0.76 | 0.86 | 0.83 |
AUROC, area under the receiver operating characteristic curve.
Data shown are AUROC values. Responses were defined as either a 2- or 3-point reduction in partial Mayo score. Analyses were performed using the variables derived as shown in Table 1.
Figure 1.Logistic regression for the prediction of (a) 2-point and (b) 3-point responders at Week 8 using data from baseline, Week 2, and Week 4. Regressions were performed using the path length (partial Mayo score only), monotonicity (partial Mayo score only), and differences between baseline and Week 2 and/or Week 4 of the variables shown in Table 1.
AUROC, area under the receiver operating characteristic curve; ROC, receiver operating characteristic.
Predictors of response at Week 8 using data from baseline, Week 2, and/or Week 4.
| Variable | Variable importance for 2-point response | Variable importance for 3-point response |
|---|---|---|
| Change from baseline in partial Mayo score at Week 4 | 100% | 100% |
| Partial Mayo score path length (baseline to Week 4) | 70.0% | 75.3% |
| Change from baseline in rectal bleeding subscore at Week 4 | 69.6% | 69.7% |
| Partial Mayo score monotonicity (baseline to Week 4) | 66.7% | 61.5% |
| Change from baseline in partial Mayo score at Week 2 | 62.3% | 70.0% |
| Change from baseline in stool frequency subscore at Week 4 | 62.2% | 67.9% |
| Change from baseline in Physician Global Assessment subscore at Week 4 | 59.8% | 60.8% |
The variable in the first row is the one with the highest importance, and the importance of the other variables is shown as a percentage relative to the first one. Random forest analyses were performed using the path length (partial Mayo score only), monotonicity (partial Mayo score only), and differences between baseline and Week 2 and/or Week 4 of the variables shown in Table 1.
Predictors of response at Week 8 using data from baseline and Week 2.
| Variable | Variable importance for 2-point response | Variable importance for 3-point response |
|---|---|---|
| Change from baseline in partial Mayo score at Week 2 | 100% | 100% |
| Partial Mayo score at Week 2 | 92.3% | 82.2% |
| Stool frequency subscore at Week 2 | 81.8% | 71.2% |
| Change from baseline in stool frequency subscore at Week 2 | 72.6% | 78.5% |
| Change from baseline in Physician Global Assessment subscore at Week 2 | 68.4% | 68.9% |
| Physician Global Assessment subscore at Week 2 | 68.3% | 62.2% |
| Change from baseline in rectal bleeding subscore at Week 2 | 64.5% | 66.4% |
| Rectal bleeding subscore at Week 2 | 51.9% | 52.5% |
The variable in the first row is the one with the highest importance, and the importance of the other variables is shown as a percentage relative to the first one. Random forest analyses were performed using the values and differences between baseline and Week 2 values of the variables shown in Table 1.
Predictors of response at Week 4 using data from baseline and Week 2.
| Variable | Variable importance for 2-point response | Variable importance for 3-point response |
|---|---|---|
| Change from baseline in partial Mayo score at Week 2 | 100% | 100% |
| Partial Mayo score at Week 2 | 88.7% | 87.8% |
| Stool frequency subscore at Week 2 | 76.1% | 70.3% |
| Change from baseline in rectal bleeding subscore at Week 2 | 70.1% | 63.2% |
| Change from baseline in stool frequency subscore at Week 2 | 70.0% | 75.4% |
| Physician Global Assessment subscore at Week 2 | 66.7% | 72.8% |
| Change from baseline in Physician Global Assessment subscore at Week 2 | 66.1% | 74.3% |
| Rectal bleeding subscore at Week 2 | 53.8% | 55.6% |
The variable in the first row is the one with the highest importance, and the importance of the other variables is shown as a percentage relative to the first one. Random forest analyses were performed using the values and differences between baseline and Week 2 values of the variables shown in Table 1.