| Literature DB >> 35154351 |
Fuyu Tang1,2, Peng Zhang1,3, Wenhua Zhao1,3, Guangye Zhu1, Gengyang Shen4, Honglin Chen1,3,4, Xiang Yu4, Zhida Zhang4, Qi Shang1,3, Xiaobing Jiang3,4, Hui Ren3,4.
Abstract
Kaempferol (KP), as a natural anti-inflammatory compound, has been reported to have curative effects on alleviating senile osteoporosis (SOP), which is an inflammation-related musculoskeletal disease, but the molecular mechanisms remain unclear due to scanty relevant studies. We predicted the targets of KP and SOP, and the common targets of them were subsequently used to carry out PPI analysis. Moreover, we adopted GO and KEGG enrichment analysis and molecular docking to explore potential mechanisms of KP against SOP. There were totally 152 KP-related targets and 978 SOP-related targets, and their overlapped targets comprised 68 intersection targets. GO enrichment analysis showed 1529 biological processes (p < 0.05), which involved regulation of inflammatory response, oxidative stress, regulation of bone resorption and remodeling, osteoblast and osteoclast differentiation, etc. Moreover, KEGG analysis revealed 146 items including 44 signaling pathways (p < 0.05), which were closely linked to TNF, IL-17, NF-kappa B, PI3K-Akt, MAPK, estrogen, p53, prolactin, VEGF, and HIF-1 signaling pathways. By means of molecular docking, we found that kaempferol is bound with the key targets' active pockets through some connections such as hydrogen bond, pi-alkyl, pi-sigma, pi-pi Stacked, pi-pi T-shaped, and van der Waals, illustrating that kaempferol has close combination with the key targets. Collectively, various targets and pathways involve in the process of kaempferol treatment against SOP through regulating inflammatory response, oxidative stress, bone homeostasis, etc. Moreover, our study first reported that kaempferol may regulate core targets' expression with involvement of inflammatory response, oxidative stress, and bone homeostasis, thus treating SOP.Entities:
Year: 2022 PMID: 35154351 PMCID: PMC8831051 DOI: 10.1155/2022/6741995
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.629
Figure 1The flowchart of this study.
Potential target genes of KP in the treatment of SOP.
| Number | Gene |
|---|---|
| 1 | NOS2 |
| 2 | PTGS1 |
| 3 | AR |
| 4 | PPARG |
| 5 | PTGS2 |
| 6 | HSP90AA1 |
| 7 | PIK3CG |
| 8 | PRKACA |
| 9 | DPP4 |
| 10 | PGR |
| 11 | F2 |
| 12 | NOS3 |
| 13 | RELA |
| 14 | AKT1 |
| 15 | BCL2 |
| 16 | BAX |
| 17 | TNF |
| 18 | JUN |
| 19 | CASP3 |
| 20 | MAPK8 |
| 21 | XDH |
| 22 | MMP1 |
| 23 | STAT1 |
| 24 | HMOX1 |
| 25 | CYP3A4 |
| 26 | CYP1A1 |
| 27 | ICAM1 |
| 28 | VCAM1 |
| 29 | ALOX5 |
| 30 | AHR |
| 31 | INSR |
| 32 | GSTM1 |
| 33 | SLPI |
| 34 | NOX4 |
| 35 | AKR1B1 |
| 36 | TYR |
| 37 | CA2 |
| 38 | ABCB1 |
| 39 | GLO1 |
| 40 | SYK |
| 41 | GSK3B |
| 42 | MMP9 |
| 43 | MMP2 |
| 44 | CDK5 |
| 45 | CCNB1 |
| 46 | ESR2 |
| 47 | TTR |
| 48 | CYP19A1 |
| 49 | EGFR |
| 50 | IGF1R |
| 51 | MPO |
| 52 | PIK3R1 |
| 53 | CA1 |
| 54 | SRC |
| 55 | PTK2 |
| 56 | KDR |
| 57 | MMP13 |
| 58 | MMP3 |
| 59 | MET |
| 60 | BACE1 |
| 61 | AKR1A1 |
| 62 | APP |
| 63 | PARP1 |
| 64 | MMP12 |
| 65 | ESR1 |
| 66 | CFTR |
| 67 | TERT |
| 68 | MAPT |
Figure 2Venn diagram of OTPs (a), PPI network of OTPs (b), and KP-OTPs-SOP network (c).
Core targets of KP in the treatment of SOP.
| Number | Core targets | Degree |
|---|---|---|
| 1 | TNF | 56 |
| 2 | AKT1 | 52 |
| 3 | SRC | 47 |
| 4 | CASP3 | 45 |
| 5 | JUN | 45 |
| 6 | EGFR | 43 |
| 7 | PTGS2 | 43 |
| 8 | HSP90AA1 | 41 |
| 9 | MMP9 | 41 |
| 10 | ESR1 | 39 |
| 11 | PPARG | 39 |
| 12 | MAPK8 | 32 |
| 13 | MMP2 | 32 |
| 14 | NOS3 | 30 |
| 15 | RELA | 29 |
| 16 | HMOX1 | 28 |
| 17 | GSK3B | 28 |
| 18 | KDR | 26 |
| 19 | AR | 26 |
| 20 | ICAM1 | 26 |
| 21 | IGF1R | 26 |
| 22 | STAT1 | 25 |
| 23 | VCAM1 | 25 |
| 24 | PGR | 24 |
| 25 | PTK2 | 24 |
| 26 | APP | 22 |
| 27 | PIK3R1 | 22 |
| 28 | MPO | 21 |
Figure 3GO.BP enrichment analysis (a–c) and pathway-target network (d). (a, b) The top and screened 20 items of biological processes in terms of p value. (c) Different colors represent different biological process groups, and node size stands for term p value, while the edges represent the connections between biological processes and targets. (d) A red V-shaped node represents a signaling pathway, a yellow circular node represents a gene, and an edge represents a relationship between a pathway and a gene.
KEGG pathway enrichment analysis.
| ID | Signaling pathway | Enriched gene number |
|
|---|---|---|---|
| hsa04933 | AGE-RAGE signaling pathway | 15 | 1.25 |
| hsa04926 | Relaxin signaling pathway | 14 | 1.24 |
| hsa04915 | Estrogen signaling pathway | 14 | 3.18 |
| hsa04657 | IL-17 signaling pathway | 12 | 8.40 |
| hsa04668 | TNF signaling pathway | 12 | 6.95 |
| hsa04917 | Prolactin signaling pathway | 9 | 3.91 |
| hsa04625 | C-type lectin receptor signaling pathway | 10 | 8.98 |
| hsa04066 | HIF-1 signaling pathway | 10 | 1.42 |
| hsa04151 | PI3K-Akt signaling pathway | 15 | 1.04 |
| hsa04012 | ErbB signaling pathway | 8 | 3.64 |
| hsa04370 | VEGF signaling pathway | 7 | 4.16 |
| hsa04010 | MAPK signaling pathway | 13 | 5.19 |
| hsa04211 | Longevity regulating pathway | 8 | 5.21 |
| hsa04064 | NF-kappa B signaling pathway | 8 | 1.73 |
| hsa04071 | Sphingolipid signaling pathway | 8 | 4.78 |
| hsa04722 | Neurotrophin signaling pathway | 8 | 4.78 |
| hsa04014 | Ras signaling pathway | 10 | 1.56 |
| hsa04664 | Fc epsilon RI signaling pathway | 6 | 1.70 |
| hsa04620 | Toll-like receptor signaling pathway | 7 | 1.94 |
| hsa04660 | T cell receptor signaling pathway | 7 | 1.94 |
| hsa04062 | Chemokine signaling pathway | 9 | 2.23 |
| hsa04662 | B cell receptor signaling pathway | 6 | 4.96 |
| hsa04919 | Thyroid hormone signaling pathway | 7 | 5.18 |
| hsa05235 | PD-L1 expression and PD-1 checkpoint pathway | 6 | 7.88 |
| hsa04068 | FoxO signaling pathway | 7 | 8.60 |
| hsa05022 | Pathways of neurodegeneration | 13 | 9.65 |
| hsa04912 | GnRH signaling pathway | 6 | 0.000100782 |
| hsa04213 | Longevity regulating pathway | 5 | 0.000138239 |
| hsa04072 | Phospholipase D signaling pathway | 7 | 0.000184632 |
| hsa04921 | Oxytocin signaling pathway | 7 | 0.000236022 |
| hsa04015 | Rap1 signaling pathway | 8 | 0.000278775 |
| hsa04152 | AMPK signaling pathway | 6 | 0.000406963 |
| hsa04621 | NOD-like receptor signaling pathway | 7 | 0.000693065 |
| hsa04910 | Insulin signaling pathway | 6 | 0.000822176 |
| hsa04150 | mTOR signaling pathway | 6 | 0.001558955 |
| hsa04024 | cAMP signaling pathway | 7 | 0.002012705 |
| hsa04920 | Adipocytokine signaling pathway | 4 | 0.002323 |
| hsa04115 | p53 signaling pathway | 4 | 0.002854606 |
| hsa04371 | Apelin signaling pathway | 5 | 0.005314536 |
| hsa04630 | JAK-STAT signaling pathway | 5 | 0.010013151 |
| hsa04340 | Hedgehog signaling pathway | 3 | 0.010486159 |
| hsa04020 | Calcium signaling pathway | 6 | 0.01301751 |
| hsa04622 | RIG-I-like receptor signaling pathway | 3 | 0.019110112 |
| hsa04550 | Signaling pathways regulating pluripotency of stem cells | 4 | 0.028737678 |
Molecular interactions of key targets and KP.
| Compound | Target | PDB ID | Affinity (kcal/mol) | Interactions |
|---|---|---|---|---|
| Kaempferol | AKT1 | 1UNQ | −6.0 | Hydrogen bond, pi-alkyl, van der Waals |
| Kaempferol | TNF | 2AZ5 | −7.6 | Hydrogen bond, van der Waals, pi-pi stacked, pi-pi T-shaped |
| Kaempferol | SRC | 1O41 | −5.9 | Hydrogen bond, pi-alkyl, van der Waals |
| Kaempferol | CASP3 | 1NMS | −8.4 | Hydrogen bond, pi-alkyl, pi-pi T-shaped, pi-cation, unfavorable donor-donor, van der Waals |
| Kaempferol | JUN | 5FV8 | −6.4 | Hydrogen bond, pi-alkyl, pi-sigma, van der Waals, amide-pi stacked |
Figure 4Simulated molecular docking of kaempferol on AKT1 (a), TNF (b), SRC (c), CASP3 (d), and JUN (e).