| Literature DB >> 35154271 |
Meichen Pan1, Lianjie Li1, Zehao Li1, Shu Chen2, Zongzhe Li3, Yuning Wang1, Henghui He1, Lihua Lin1, Haihao Wang4, Qian Liu1.
Abstract
Aortic dissection (AD) is a cardiovascular disease characterized by high mortality and poor prognosis. Although FBN1 is associated with syndromic AD, its association with non-syndromic AD remains unclear. In this study, DNA samples from 90 Chinese individuals with non-syndromic AD (60 Stanford A, 30 Stanford B types) were analyzed to determine the relationship between diverse genotypes of the FBN1 gene and non-syndromic AD. Eleven pathogenic/likely pathogenic variants (1 novel) were identified in 12.2% of patients with non-syndromic AD. Patients with positive variants suffered from AD at a younger age than those in the negative variant group. Among the six positive missense mutations associated with cysteine residue hosts, four (66.7%) were Stanford A AD, whereas two (33.3%) were Stanford B AD. Three (100%) positive splicing/truncation variant hosts were Stanford A AD. The splicing/truncation variants and missense variants involving cysteine residues in the FBN1 gene increased the risk of Stanford A AD. Ten common SNPs that increased susceptibility to AD were identified. In particular, five SNPs were detected significantly in Stanford A AD, whereas another four SNPs were significantly detected in Stanford B AD. These significant variants can function as biomarkers for the identification of patients at risk for AD. Our findings have the potential to broaden the database of positive mutations and common SNPs of FBN1 in non-syndromic AD among the Chinese population.Entities:
Keywords: FBN1; SNP; aortic dissection; cbEGF domains; cysteine residues; splicing/truncation variants
Year: 2022 PMID: 35154271 PMCID: PMC8829505 DOI: 10.3389/fgene.2022.778806
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
The demographic and clinical features of study participants.
| Characteristics | Stanford A AD ( | Stanford B AD ( | Total AD ( |
|---|---|---|---|
| Age, years | 25/66/47.43 | 21/72/51.43 | 21/72/48.76 |
|
| |||
| Gender | 42 (70.0%) | 20 (66.7%) | 62 (68.9%) |
|
| |||
| Hypertension | 29 (48.3%) | 22 (73.3%) | 51 (56.7%) |
| Smoking | 18 (30.0%) | 5 (16.7%) | 23 (25.6%) |
| Coronary artery dissection | 7 (11.7%) | 1 (3.3%) | 8 (8.9%) |
| Coronary atherosclerotic heart disease | 12 (20.0%) | 2 (6.67%) | 14 (15.6%) |
Detailed genetic and clinical information of AD patients harboring positive variants in FBN1.
| Sample, stanford type | Age ranges, sex | Position | Function | Domain | Nucleotide change | Amino change | Functional predicted results in sift, mutation taster | Classification | Novel | In control group | ACMG criterion fulfilled |
|---|---|---|---|---|---|---|---|---|---|---|---|
| A59, Stanford A | 40–45, M | chr15: 48,714,188 | missense | cbEGF-like#39 | 7531T > C | p.Cys2511Arg | D, D | Pathogenic | Reported | Absent | PS1+PM1+PM2+PM5+PP2+PP3+PP5 |
| C2, Stanford A | 40–45, F | chr15: 48,795,983 | splicing | / | 2,113+1G > A | / | /, D | Pathogenic | Reported | Absent | PSV1+PM2+PP3+PP5 |
| C13, Stanford A | 30–34, F | chr15: 48,717,610 | missense | cbEGF-like#38 | c.7409G > A | p.Cys2470Tyr | D, D | Likely Pathogenic | Reported | Absent | PM1+PM2+PM5+PP2+PP3+PP5 |
| C21, Stanford B | 35–40, F | chr15: 48,760,243 | missense | TGFBP#4 | c.4639A > G | p.Thr1547Ala | T, D | Pathogenic | Reported | Absent | PM1+PM2+PP2+PP3 |
| C24, Stanford A | 40–45, F | chr15: 48,776,059 | frameshift deletion | cbEGF-like#16 | c.3793delT | p.Cys1265fs | /,/ | Likely Pathogenic | Reported | Absent | PSV1+PM1+PM2+PP3 |
| C38, Stanford A | 30–35, M | chr15: 48,800,791 | missense | cbEGF-like#5 | c.1825C > T | p.Arg609Cys | D, D | Pathogenic | Reported | Absent | PM1+PM2+PP2+PP3+PP5 |
| C46, Stanford A | 46–50, F | chr15: 48,722,988 | missense | cbEGF-like#35 | c.6751T > C | p.Cys2251Arg | D, D | Likely Pathogenic | Reported | Absent | PS1+PM1+PM2+PM5+PP2+PP3+PP5 |
| C52, Stanford B | 35–40, M | chr15: 48,797,266 | missense | cbEGF-like#6 | c.1916G > C | p.Cys639Ser | D, D | Likely Pathogenic | Reported | Absent | PS1+PM1+PM2+PM5+PP2+PP3+PP5 |
| C61, Stanford B | 46–50, F | chr15: 48,766,769 | missense | cbEGF-like#18 | c.4043G > A | p.Cys1348Tyr | D, D | Pathogenic | Reported | Absent | PM1+PM2+PM5+PP2+PP3+PP5 |
| C87, Stanford A | 40–45, M | chr15: 48,758,018 | frameshift deletion | TGFBP#4 | c.4784delT | p.Phe1595fs | /,/ | Likely Pathogenic | Novel | Absent | PVS1+PM1+PM2 |
| C105, Stanford B | 56–60, M | chr15: 48,722,942 | missense | cbEGF-like#35 | c.A6797G | p.Lys2266Arg | D, D | Likely Pathogenic | Reported | Absent | PM1+PM2+PP2+PP3 |
AbbreviationsM, male; F, female; chr, chromosome; cbEGF, calcium-binding epidermal growth factor-like domain; TGFBP, transforming growth factor β-binding protein-like domains; D, deleterious; T, tolerated.
FIGURE 1Structural domain of fibrillin-1 (encoded by FBN1 gene) and distribution of both positive variants and significant SNPs in the protein were shown.
10 significant SNPs between AD group and reference group.
| SNPs (locations) | AD group ( | Reference group ( |
|---|---|---|
| MAF, OR (CI, 95%), P value | ||
| rs140598 (exon/cbEGF#13) | 0.42, 2.56 (1.61–4.07), | 0.22 |
| rs363830 (exon/cbEGF#36) | 0.19, 3.07 (1.66–5.70), | 0.07 |
| rs25458 (exon/cbEGF#06) | 0.46, 1.80 (1.15–2.83), | 0.32 |
| rs363836 (exon/cbEGF#35) | 0.19, 2.99 (1.62–5.54), | 0.07 |
| rs11853943 (intron) | 0.47, 1.87 (1.19–2.94), | 0.32 |
| rs140605 (intron) | 0.46, 1.79 (1.14–2.81), | 0.32 |
| rs142758852 (intron) | 0.19, 2.58 (1.41–4.73), | 0.08 |
| rs363838 (intron) | 0.19, 3.07 (1.66–5.70), | 0.07 |
| rs55840194 (intron) | 0.19, 3.00 (1.62–5.54), | 0.07 |
| rs57512865 (intron) | 0.31, 1.69 (1.03–2.76), | 0.21 |
AD, aortic dissection; MAF, minor allele frequency; OR, odds ratio; CI, confidence interval.
Detailed distribution of 10 significant SNPs in Stanford A AD and Stanford B AD.
| SNPs | Stanford A AD group | Stanford B AD group | Reference group MAF |
|---|---|---|---|
| MAF, OR (CI,95%), P value | MAF, OR (CI,95%), P value | ||
| rs363830 (exon) | 0.20, 3.30 (1.62–6.71), | 0.17, No significance | 0.07 |
| rs363836 (exon) | 0.20, 3.21 (1.58–6.52), | 0.17, No significance | 0.07 |
| rs142758852 (intron) | 0.20, 2.78 (1.38–5.58), | 0.17, No significance | 0.08 |
| rs363838 (intron) | 0.20, 3.30 (1.62–6.71), | 0.17, No significance | 0.07 |
| rs55840194 (intron) | 0.20, 3.21 (1.58–6.52), | 0.17, No significance | 0.07 |
| rs25458 (exon) | 0.38, No significance | 0.60, 3.23 (1.53–6.86), | 0.32 |
| rs11853943 (intron) | 0.38, No significance | 0.63, 3.70 (1.72–7.92), | 0.32 |
| rs140605 (intron) | 0.38, No significance | 0.60, 3.21 (1.51–6.80), | 0.32 |
| rs57512865 (intron) | 0.23, No significance | 0.47, 3.27 (1.55–6.88), | 0.21 |
| rs140598 (exon) | 0.40, 2.34 (1.35–4.07), | 0.47, 3.07 (1.46–6.46), | 0.22 |
AD, aortic dissection; MAF, minor allele frequency; OR, odds ratio; CI, confidence interval. Bonferroni-corrected significance threshold p < 0.025.
FIGURE 2Age of onset of AD in the FBN1 positive variant (42.55 ± 6.95 years) and negative groups (49.63 ± 10.31 years, p = 0.03). The error bars indicate standard error.
Specific positive variants and SNPs information of FBN1 between Stanford A and Stanford B cases.
| Classification | Stanford type AD | |
|---|---|---|
| Stanford A | Stanford B | |
|
| 7 | 4 |
| Missense | 4 | 4 |
| Cysteine residues involved | 4 | 2 |
| Frameshift deletion/splicing | 3 | 0 |
| 3′ region positive variants | 2 | 0 |
| 5′ region positive variants | 0 | 0 |
| Positive variants in other region | 5 | 4 |
| CbEGF domains | 5 | 3 |
| TGFBP domains involved | 1 | 1 |
| Significant exonic SNPs of | 3 | 2 |
| CbEGF domains | 3 | 2 |