| Literature DB >> 35153500 |
Johnson Chia-Shen Yang1,2, Lien-Hung Huang1,2, Shao-Chun Wu3,4, Yi-Chan Wu1,4, Chia-Jung Wu1,4, Chia-Wei Lin1,4, Pei-Yu Tsai1,4, Peng-Chen Chien1,4, Ching-Hua Hsieh1,2.
Abstract
PURPOSE: This study aims at profiling the expression of dysregulated genes in circulating monocytes of patients with cancer-related lower limb lymphedema before and after treatment with supermicrosurgical lymphaticovenous anastomosis (LVA).Entities:
Keywords: NGS; functional modules; hub gene; real-time PCR; transcriptome
Year: 2022 PMID: 35153500 PMCID: PMC8824698 DOI: 10.2147/JIR.S350421
Source DB: PubMed Journal: J Inflamm Res ISSN: 1178-7031
Patient Demographics (n=51)
| Study Group Lymphedema | Control Group Lymphedema-Free | ||
|---|---|---|---|
| Sex, female, n (%) | 25 (100) | 26 (100) | 1.000 |
| Age, years, mean±SD | 60.6±8.6 | 56.8±10.4 | 0.081 |
| Etiology, cancer type, n (%) | 0.002 | ||
| Cervical | 9 (36.0) | 0 (0.0) | |
| Endometrial | 11 (44.0) | 14 (53.8) | |
| Ovarian | 4 (16.0) | 12 (46.2) | |
| Vulvar | 1 (4.0) | 0 (0.0) | |
| ISL Stage (0-I/II–III), n (%) | 2(8.0)/23(92.0) | n/a | n/a |
| BMI, kg/m2, mean±SD | 25.6±4.9 | 25.3±4.6 | 0.840 |
| DM, n (%) | 6 (24.0) | 5 (19.2) | 0.941 |
| HTN, n (%) | 7 (28.0) | 7 (26.9) | >0.999 |
| Affected limb (Left/Right), n (%) | 14 (56.0)/11 (44.0) | n/a | n/a |
| Chemotherapy, n (%) | 9 (36.0) | 12 (46.2) | 0.651 |
| Radiotherapy, n (%) | 11 (44.0) | 2 (7.7) | 0.008 |
| Duration of post-cancer treatment follow-up, months, median [IQR] | 106.0 [42.0, 226.0] | 76.5 [66.0, 102.0] | 0.423 |
| Duration of LE, year, median [IQR] | 1.40 [0.55, 7.24] | n/a | n/a |
Notes: Normally distributed data are expressed as mean ± SD (standard deviation); non-normally distributed data are expressed as median [Inter-Quartile Range (IQR), 25–75%].
Abbreviations: ISL, International Lymphology Society; BMI, body mass index; DM, diabetes mellitus; HTN, hypertension; LE, lymphedema; n/a, not applicable.
Intraoperative Findings
| Lymphedema Group (n=25) | |
|---|---|
| Total LVA performed | 144 |
| LVA performed per patient, median [IQR] | 6.0 [4.0, 7.0] |
| Diameter of LVs, overall, mm, median [IQR] | 0.68 [0.51, 0.80] |
| ICG (+) LVs found, n (%) | 109 (75.7) |
| Diameter, mm, median [IQR] | 0.75 [0.57, 0.81] |
| Lymphosclerosis classification, n, (%) | |
| s0 (ideal for LVA) | 10 (6.9) |
| s1 (ideal for LVA) | 98 (68.1) |
| s2 (suboptimal for LVA) | 29 (20.1) |
| s3 (not suitable for LVA) | 7 (4.9) |
| Total number of recipient veins | 83 |
| Recipient veins per patient median [IQR] | 3.0 [2.0, 4.0] |
| Diameter, mm, median [IQR] | 0.97 [0.8, 1.2] |
Note: Non-normally distributed data are shown as median (Inter-Quartile Range, 25–75%).
Abbreviations: LVs, lymphatic vessels; LVA, lymphaticovenous anastomosis; ICG (+), indocyanine green-positive.
Figure 1Summary. Fifty-one women with post-treatment gynecological cancer, including those with unilateral lymphedema (study group, n=25) and those without (control group, n=26). Venous blood samples obtained from the study group before and after LVA and those from the controls were sent for next-generation sequencing, which was validated by real-time PCR. Before LVA, 148 dysregulated genes were identified by NGS. Compared to the controls, 108 and 40 up- and downregulated genes were detected, respectively. After LVA, expression of 78 of the genes was restored to near baseline levels. Of these, 69 had been upregulated (63 protein coding genes, six non-coding genes) and nine had been downregulated.
Figure 2Next-Generation Sequencing (NGS) validation with real-time PCR. From the 72 genes that demonstrated recovery to baseline levels after LVA, gene expressions with fold changes greater than two were selected for NGS validation with real-time PCR. GPI, SPYR1, SLC1A3, ZBTB16, ALOX15B, and CCL2 with gene expression ranging from 2.3- to 8.8-fold changes were selected and analyzed by real-time PCR. The results were (A) GPI was an upregulated gene before LVA and remained upregulated after LVA; (B–E) SPYR1, SLC1A3, ZBTB16, and ALOX15B showed significantly upregulated expressions before LVA and were restored to baseline expression after LVA; (F) CCL2 was down-regulated before LVA but demonstrated no significant post-LVA change. These findings validated the NGS data. *In the figure represented statistical significant difference.
Figure 3The protein-protein interaction (PPI), functional modules, and hub genes. Five functional modules and six hub genes were identified from the PPI networks that comprised 28 interconnecting genes. Module 1, which is involved with immunity, contained the hub gene, CCL2; Module 2, which is associated with lipid metabolism, included the hub genes LPL and PDK4; Module 3, which is linked to oxidative stress, contained the hub gene FOXO3; Module 4, which is associated with transcriptional regulators, contained the hub gene EGR1; Module 5, which is related to tumor suppression, contained the hub gene DUSP5. Downregulated genes are colored in red; upregulated genes are colored in blue.
Functional Modules and Hub Genes Identified from 28 Interconnected Genes
| *CCL2 | C-C motif chemokine ligand 2 |
| CD163 | Cluster of Differentiation 163 |
| ADORA3 | Adenosine A3 Receptor |
| P2RY1 | Purinergic Receptor P2Y1 |
| CLEC4E | C-Type Lectin Domain Family 4 Member E |
| IL1R2 | Interleukin 1 Receptor Type 2 |
| IL1RAP | Interleukin 1 Receptor Accessory Protein |
| ECHDC3 | Enoyl-CoA Hydratase Domain Containing 3 |
| *LPL | Lipoprotein lipase |
| *PDK4 | Pyruvate dehydrogenase kinase 4 |
| ACSL1 | Acyl-CoA Synthetase Long Chain Family Member 1 |
| PLIN2 | Perilipin 2 |
| *FOXO3 | Forkhead box O3 |
| SESN1 | Sestrin 1 |
| SCO2 | Supercritical Carbon Dioxide |
| *EGR1 | Early Growth Response 1 |
| IER2 | Immediate Early Response 2 |
| BTG2 | B-cell translocation gene 2 |
| NR4A1 | Nuclear Receptor Subfamily 4 Group A Member 1 |
| CDK5R1 | Cyclin Dependent Kinase 5 Regulatory Subunit 1 |
| ETS2 | ETS Proto-Oncogene 2, Transcription Factor |
| PHC2 | Polyhomeotic Homolog 2 |
| KLF7 | Krueppel-like factor 7 |
| NFIA | Nuclear factor 1 A-type |
| SLC1A3 | Excitatory amino acid transporter 1 |
| *DUSP5 | Dual Specificity Phosphatase 5 |
| MAP3K8 | Mitogen-Activated Protein Kinase Kinase Kinase 8 |
| SPYR1 | Mycobacterium sp. Spyr1 |
Note: *Hub gene.