Literature DB >> 35147406

Structure-Activity Relationships of Novel Tau Ligands: Passive Fibril Binders and Active Aggregation Inhibitors.

David W Baggett1, Abhinav Nath1.   

Abstract

Intrinsically disordered proteins (IDPs) are core components of many biological processes and are central players in several pathologies. Despite being important drug targets, attempts to design small-molecule ligands that would help understand and attenuate their behavior are frustrated by the structural diversity exhibited by these flexible proteins. To accommodate the dynamic nature of IDPs, we developed a procedure that efficiently identifies active small-molecule ligands for disordered proteins. By exploring the chemical space around these ligands, we refined their effect on aggregation and identified molecular features critical for activity and affinity. Notably, the discovery of this new family of disordered protein ligands was achieved more quickly and with less expense than conventional high-throughput screening (HTS) or docking alone would have allowed. The resulting ligands include tau aggregation inhibitors as well as at least one compound that binds fibrils potently but does not appear to perturb the extent of kinetics of aggregation.

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Year:  2022        PMID: 35147406      PMCID: PMC9381419          DOI: 10.1021/acschembio.2c00012

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   4.634


  40 in total

1.  Assembly of tau protein into Alzheimer paired helical filaments depends on a local sequence motif ((306)VQIVYK(311)) forming beta structure.

Authors:  M von Bergen; P Friedhoff; J Biernat; J Heberle; E M Mandelkow; E Mandelkow
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

2.  COPASI--a COmplex PAthway SImulator.

Authors:  Stefan Hoops; Sven Sahle; Ralph Gauges; Christine Lee; Jürgen Pahle; Natalia Simus; Mudita Singhal; Liang Xu; Pedro Mendes; Ursula Kummer
Journal:  Bioinformatics       Date:  2006-10-10       Impact factor: 6.937

3.  AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.

Authors:  Oleg Trott; Arthur J Olson
Journal:  J Comput Chem       Date:  2010-01-30       Impact factor: 3.376

4.  Posttranslational Modifications Mediate the Structural Diversity of Tauopathy Strains.

Authors:  Tamta Arakhamia; Christina E Lee; Yari Carlomagno; Duc M Duong; Sean R Kundinger; Kevin Wang; Dewight Williams; Michael DeTure; Dennis W Dickson; Casey N Cook; Nicholas T Seyfried; Leonard Petrucelli; Anthony W P Fitzpatrick
Journal:  Cell       Date:  2020-02-06       Impact factor: 41.582

Review 5.  Islet amyloid polypeptide, islet amyloid, and diabetes mellitus.

Authors:  Per Westermark; Arne Andersson; Gunilla T Westermark
Journal:  Physiol Rev       Date:  2011-07       Impact factor: 37.312

6.  Improved low molecular weight Myc-Max inhibitors.

Authors:  Huabo Wang; Dalia I Hammoudeh; Ariele Viacava Follis; Brian E Reese; John S Lazo; Steven J Metallo; Edward V Prochownik
Journal:  Mol Cancer Ther       Date:  2007-09       Impact factor: 6.261

Review 7.  Tau and tauopathies.

Authors:  Thomas Arendt; Jens T Stieler; Max Holzer
Journal:  Brain Res Bull       Date:  2016-09-09       Impact factor: 4.077

8.  Thioflavin T as an amyloid dye: fibril quantification, optimal concentration and effect on aggregation.

Authors:  Christine Xue; Tiffany Yuwen Lin; Dennis Chang; Zhefeng Guo
Journal:  R Soc Open Sci       Date:  2017-01-04       Impact factor: 2.963

9.  Targeting the intrinsically disordered structural ensemble of α-synuclein by small molecules as a potential therapeutic strategy for Parkinson's disease.

Authors:  Gergely Tóth; Shyra J Gardai; Wagner Zago; Carlos W Bertoncini; Nunilo Cremades; Susan L Roy; Mitali A Tambe; Jean-Christophe Rochet; Celine Galvagnion; Gaia Skibinski; Steven Finkbeiner; Michael Bova; Karin Regnstrom; San-San Chiou; Jennifer Johnston; Kari Callaway; John P Anderson; Michael F Jobling; Alexander K Buell; Ted A Yednock; Tuomas P J Knowles; Michele Vendruscolo; John Christodoulou; Christopher M Dobson; Dale Schenk; Lisa McConlogue
Journal:  PLoS One       Date:  2014-02-14       Impact factor: 3.240

10.  Cryo-EM structures of tau filaments from Alzheimer's disease with PET ligand APN-1607.

Authors:  Sjors H W Scheres; Michel Goedert; Yang Shi; Alexey G Murzin; Benjamin Falcon; Alexander Epstein; Jonathan Machin; Paul Tempest; Kathy L Newell; Ruben Vidal; Holly J Garringer; Naruhiko Sahara; Makoto Higuchi; Bernardino Ghetti; Ming-Kuei Jang
Journal:  Acta Neuropathol       Date:  2021-03-16       Impact factor: 17.088

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