Literature DB >> 35145757

5-Amino-1H-benzimidazole-2(3H)-thione: mol-ecular, crystal structure and Hirshfeld surface analysis.

Dilnoza Rakhmonova1, Lobar Gapurova1, Surayyo Razzoqova1, Shakhnoza Kadirova1, Batirbay Torambetov1, Zukhra Kadirova1,2, Svitlana Shishkina3.   

Abstract

The title compound, C7H7N3S, which has potential biological activity, can be used as a ligand in metal complexation. This compound exists as the thione tautomer in the crystal phase, which is confirmed by the study of its mol-ecular structure. The amino group has pyramidal configuration. In the crystal phase, the two independent mol-ecules in the asymmetric unit form tetra-mers as a result of N-H⋯S hydrogen bonds. These tetra-mers are linked by N-H⋯N hydrogen bonds, forming chains/tubes in the [010] direction. The Hirshfeld surface analysis showed that the highest contribution to the total surface is provided by H⋯H inter-actions as well as S⋯H/H⋯S and C⋯H/H⋯C contacts associated with X-H⋯S hydrogen bonds and X-H⋯C(π) inter-actions. © Rakhmonova et al. 2022.

Entities:  

Keywords:  5-amino-1H-benzimidazole-2(3H)-thione; Hirshfeld analysis; crystal structure; hydrogen bond; mol­ecular structure; periodic calculations

Year:  2022        PMID: 35145757      PMCID: PMC8819443          DOI: 10.1107/S2056989022000792

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


  12 in total

1.  QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials.

Authors:  Paolo Giannozzi; Stefano Baroni; Nicola Bonini; Matteo Calandra; Roberto Car; Carlo Cavazzoni; Davide Ceresoli; Guido L Chiarotti; Matteo Cococcioni; Ismaila Dabo; Andrea Dal Corso; Stefano de Gironcoli; Stefano Fabris; Guido Fratesi; Ralph Gebauer; Uwe Gerstmann; Christos Gougoussis; Anton Kokalj; Michele Lazzeri; Layla Martin-Samos; Nicola Marzari; Francesco Mauri; Riccardo Mazzarello; Stefano Paolini; Alfredo Pasquarello; Lorenzo Paulatto; Carlo Sbraccia; Sandro Scandolo; Gabriele Sclauzero; Ari P Seitsonen; Alexander Smogunov; Paolo Umari; Renata M Wentzcovitch
Journal:  J Phys Condens Matter       Date:  2009-09-01       Impact factor: 2.333

2.  In vivo anti-inflammatory activity and docking study of newly synthesized benzimidazole derivatives bearing oxadiazole and morpholine rings.

Authors:  Ankita Rathore; Raja Sudhakar; Mohamed Jawed Ahsan; Abuzer Ali; Naidu Subbarao; Surender Singh Jadav; Sadiq Umar; M Shahar Yar
Journal:  Bioorg Chem       Date:  2016-11-29       Impact factor: 5.275

3.  Antifungal and anthelmintic activity of novel benzofuran derivatives containing thiazolo benzimidazole nucleus: an in vitro evaluation.

Authors:  R Kenchappa; Yadav D Bodke; Sandeep Telkar; M Aruna Sindhe
Journal:  J Chem Biol       Date:  2016-09-08

4.  Synthesis and antitumor activity of novel benzimidazole-5-carboxylic acid derivatives and their transition metal complexes as topoisomerease II inhibitors.

Authors:  Shadia A Galal; Khaled H Hegab; Ahmed M Hashem; Nabil S Youssef
Journal:  Eur J Med Chem       Date:  2010-09-17       Impact factor: 6.514

5.  Synthesis and in vitro evaluation of West Nile virus protease inhibitors based on the 2-{6-[2-(5-phenyl-4H-{1,2,4]triazol-3-ylsulfanyl)acetylamino]benzothiazol-2-ylsulfanyl}acetamide scaffold.

Authors:  Sanjay Samanta; Ting Liang Lim; Yulin Lam
Journal:  ChemMedChem       Date:  2013-04-25       Impact factor: 3.466

6.  Cyclotrimerization of terminal alkynes catalyzed by the system of NiCl2/Zn and (benzimidazolyl)-6-(1-(arylimino)ethyl)pyridines.

Authors:  Chanjuan Xi; Zelin Sun; Yongbing Liu
Journal:  Dalton Trans       Date:  2013-08-13       Impact factor: 4.390

7.  Advanced capabilities for materials modelling with Quantum ESPRESSO.

Authors:  P Giannozzi; O Andreussi; T Brumme; O Bunau; M Buongiorno Nardelli; M Calandra; R Car; C Cavazzoni; D Ceresoli; M Cococcioni; N Colonna; I Carnimeo; A Dal Corso; S de Gironcoli; P Delugas; R A DiStasio; A Ferretti; A Floris; G Fratesi; G Fugallo; R Gebauer; U Gerstmann; F Giustino; T Gorni; J Jia; M Kawamura; H-Y Ko; A Kokalj; E Küçükbenli; M Lazzeri; M Marsili; N Marzari; F Mauri; N L Nguyen; H-V Nguyen; A Otero-de-la-Roza; L Paulatto; S Poncé; D Rocca; R Sabatini; B Santra; M Schlipf; A P Seitsonen; A Smogunov; I Timrov; T Thonhauser; P Umari; N Vast; X Wu; S Baroni
Journal:  J Phys Condens Matter       Date:  2017-10-24       Impact factor: 2.333

8.  CrystalExplorer: a program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals.

Authors:  Peter R Spackman; Michael J Turner; Joshua J McKinnon; Stephen K Wolff; Daniel J Grimwood; Dylan Jayatilaka; Mark A Spackman
Journal:  J Appl Crystallogr       Date:  2021-04-27       Impact factor: 3.304

9.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.