Stefano Pantaleone1,2, Marta Corno1, Albert Rimola3, Nadia Balucani2,4,5, Piero Ugliengo1. 1. Dipartimento di Chimica and Nanostructured Interfaces and Surfaces (NIS) Centre, Università degli Studi di Torino, via P. Giuria 7, I-10125, Torino, Italy. 2. Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di Sotto 8, I-06123 Perugia, Italy. 3. Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Catalonia Spain. 4. Osservatorio Astrofisico di Arcetri, Largo E. Fermi 5, I-50125 Firenze, Italy. 5. Université Grenoble Alpes, CNRS, Institut de Planétologie et d'Astrophysique de Grenoble (IPAG), F-38000 Grenoble, France.
Abstract
Phosphorus is an element of primary importance for all living creatures, being present in many biological activities in the form of phosphate (PO4 3-). However, there are still open questions about the origin of this specific element and on the transformation that allowed it to be incorporated in biological systems. The most probable source of prebiotic phosphorus is the intense meteoritic bombardment during the Archean era, a few million years after the solar system formation, which brought tons of iron-phosphide materials (schreibersite) on the early Earth crust. It was recently demonstrated that by simple wetting/corrosion processes from this material, various oxygenated phosphorus compounds are produced. In the present work, the wetting process of schreibersite (Fe2NiP) was studied by computer simulations using density functional theory, with the PBE functional supplemented with dispersive interactions through a posteriori empirical correction. To start disentangling the complexity of the system, only the most stable (110) surface of Fe2NiP was used simulating different water coverages, from which structures, water binding energies, and vibrational spectra have been predicted. The computed (ana-)harmonic infrared spectra have been compared with the experimental ones, thus, confirming the validity of the adopted methodology and models.
Phosphorus is an element of primary importance for all living creatures, being present in many biological activities in the form of phosphate (PO4 3-). However, there are still open questions about the origin of this specific element and on the transformation that allowed it to be incorporated in biological systems. The most probable source of prebiotic phosphorus is the intense meteoritic bombardment during the Archean era, a few million years after the solar system formation, which brought tons of iron-phosphide materials (schreibersite) on the early Earth crust. It was recently demonstrated that by simple wetting/corrosion processes from this material, various oxygenated phosphorus compounds are produced. In the present work, the wetting process of schreibersite (Fe2NiP) was studied by computer simulations using density functional theory, with the PBE functional supplemented with dispersive interactions through a posteriori empirical correction. To start disentangling the complexity of the system, only the most stable (110) surface of Fe2NiP was used simulating different water coverages, from which structures, water binding energies, and vibrational spectra have been predicted. The computed (ana-)harmonic infrared spectra have been compared with the experimental ones, thus, confirming the validity of the adopted methodology and models.
Naturally occurring iron–nickel phosphides are in the mineral
form of schreibersite (Fe,Ni)3P, which is present as a
minor phase of iron meteorites,[1−3] whose heavy elements are the first
that condensate from solar nebulae.[4]Phosphorus is present in living systems in the form of phosphate
(PO43–) and, despite its low abundance
(1%) with respect to the other macro-elements (SONCH), it is ubiquitous,
in nucleic acids (DNA and RNA), in molecules that provide energy for
metabolic processes (ATP, ADP, AMP), and in phospholipids, among others.
The most abundant source of phosphorus on Earth is the mineral apatite
(Ca5(PO4)3(F,OH,Cl), which, however,
has extremely low solubility and reactivity, and therefore, it can
hardly support the presence of the phosphate groups in living organisms.[5] As a consequence, other possible sources of reduced
and reactive phosphorus were investigated in the last decades.In 1955, Gulick postulated the release of phosphates by corrosion
reactions operated by water contact with the surface of schreibersite.[6] Indeed, during the Archean era (4.0–3.8
billion years ago), just after the solar system formation, a large
quantity of small bodies (meteorites, comets, and other asteroidal
bodies) hit the planet, thus, brining all the organic matter encapsulated
inside.[7−9]In 2005, Pasek et al. carried out the first
water corrosion experiment
on a model of schreibersite, Fe3P, in which they demonstrated
the production of different phosphorus oxygenated compounds (phosphates,
phosphites, hypophosphites), and also their reaction with organic
molecules.[10] Recent models estimate that
about 1–10% of the early Earth crust was composed by phosphide
minerals and that a meteorite of about 60 tons should produce about
1 ton of reduced phosphorus.[11] Another
route recently proposed by Hess et al. implies the in situ formation
of schreibersite by light-activated processes in clay-rich soils.[12] According to this study, 10–1000 kg/year
of phosphide and 100–10000 kg/year of phosphite and hypophosphite
could be produced, ensuring a continuous availability of reduced phosphorus
without depending on the meteor flux. Therefore, the reactivity of
schreibersite toward water is a key step for biological phosphorus
incorporation.The first (Fe,Ni)3P water corrosion
experiment by Pasek
et al. encouraged many subsequent works;[13−19] in some cases, organic species were added in the experiment,[16] showing the tendency of reduced phosphorus to
activate phosphorylation reactions, also producing nucleosides[14] and complex sugars.[19] Experimentally, the wetting process of schreibersite was investigated
by means of RAIRS (Reflection–Absorption InfraRed Spectroscopy)
at both different temperatures (120–298 K) and water coverages
(from 1 to 100 Langmuir, 1 Langmuir representing the monolayer).[13,17] These studies showed that the H2O molecules preferentially
bind to the P atoms at the schreibersite surface through a direct
P···O interaction, also confirmed by addition of isotopic
water-18O.[18] Nevertheless, an
atomistic perspective of the whole water corrosion process of schreibersite
(both from the point of view of the adsorption and the reactivity)
is still elusive, as, to our knowledge, no computational work has
been performed on this specific topic. Some studies were carried out
on the “father” of schreibersite, Fe3P, studying
the phase stability of different polymorphs in order to understand
if it is present, and in which form, in planetary cores.[20−22]A recent computational work on the bulk and surface structures
and properties of schreibersite was published by us.[23] According to that, it is unlikely that the oxygen of H2O (partially negatively charged) interacts with the surface
P atoms, which also bring a partial (close to −1e) negative
charge,[23−26] thus, resulting in an electrostatic repulsion. In the present paper,
we simulate the adsorption of water on the most stable facet of schreibersite,
namely, the {110} exploring different water’s coverage regimes,
up to a water multilayer. Moreover, also the water deprotonation was
considered to explore the very first step of the route toward the
formation of phosphorus oxygenated species. The most reactive surfaces
will be the object of future work.
Computational
Details
The adsorption of water on schreibersite was studied
by means of
periodic DFT calculations carried out with the Vienna Ab-initio Simulation
Package (VASP) code,[27−30] which uses projector-augmented wave (PAW) pseudopotentials[31] to describe the ionic cores and a plane wave
basis set for the valence electrons. The same approach was used to
characterize the pristine schreibersite.[23]Geometry optimizations and frequency calculations were performed
with the gradient corrected PBE functional,[32] with a posteriori Grimme D2 correction,[33] modified for solids (D*).[34] Moreover,
C6 atomic coefficients related to polarizabilities on Fe and Ni metal
atoms were set to 0 (i.e., no dispersion interaction contribution
from metal atoms). This setup was chosen according to the best results
obtained in our previous work on the bulk and bare surfaces of schreibersite.[23] On O and H atoms, the original D* parameters
were used. This method of choice is referred to as PBE-D*0 along the
work. The cutoff energy of plane waves (which control the accuracy
of the calculations) was set to 500 eV. The self-consistent field
(SCF) iterative procedure was converged to a tolerance in total energy
of ΔE = 10–5 eV for geometry
optimizations, while for frequency calculations, the tolerance was
decreased to ΔE = 10–6 eV.
The tolerance on gradients during the optimization procedure was set
to 0.01 eV/Å for each atom in each direction. The Monkhorst–Pack
sampling of the Brillouin zone was used for the k-points mesh. Shrinking factors for the (110) surface have been set
on (8 8 1) on the unit cell (a = 4.374 Å, b = 6.719 Å, γ = 108.998°), while they were
reduced to (4 8 1) and (4 4 1) for 2 × 1 and 2 × 2 supercell
models (for a total number of 64 and 16 k-points,
respectively). The shrinking factor related to the nonperiodic direction
was always set to “1” (i.e., no sampling of the reciprocal
space). As VASP relies on the plane waves basis set and, accordingly,
surfaces are replicated also along the nonperiodic direction, the
vacuum space among fictitious replicas was set to at least 20 Å
to minimize the interactions among replica images. Therefore, the
final c cell axis was set to 40 Å. The relaxation
of water adsorbed at the (110) surface was carried out by moving all
atoms in the unit cell while keeping the cell parameters fixed at
the geometry optimized for the bare surface to enforce the rigidity
due to the underneath bulk.Adsorption energies (AE) of water
adsorbed on the (110) shreibersite
surface (water was only adsorbed on one of the two equivalent (110)
faces of schreibersite) were calculated aswhere ECPLX is
the energy of the complex (water adsorbed on the surface), EH and E(110) are the energies of the isolated water molecule and the (110) bare
surface, each one calculated at its relaxed geometry, while n is the number of adsorbed water molecules per surface
unit cell. The corresponding adsorption enthalpy (AH) and free energy
(AG) were calculated by adding the proper thermodynamic corrections.
When considering water dissociation at the (110) surface, the reaction
energy is computed with respect to the most stable molecular adsorption
and labeled DE, as well as the corresponding thermic corrections to
the energy (DH and DG). Please note that negative values of AE and
DE mean thermodynamic favorable processes.Vibrational frequencies
were computed at the Γ point by numerical
differentiation of the analytical first derivatives using the central
difference formula (i.e., two displacements of 0.02 Å for each
atom in each x-, y-, and z-direction), in order to confirm that the optimized structure
is a minimum (all real frequencies) and to apply thermal corrections
to the calculated energies. To simulate IR spectra, the Phonopy[35] code was used for both generating atomic displacements
and processing VASP outputs. To plot IR spectra, the convolution of
intensities was done with Lorentzian functions and a fwhm (full width
at half maximum) of 50 cm–1. Thermochemistry has
been corrected using the quasi-harmonic approximation, proposed by
Grimme,[36] in which frequencies lower than
the 100 cm–1 are replaced by free rotor modes. This
improves the calculation of the thermal corrections, which would be
otherwise underestimated when considering very low frequency values.
To avoid discontinuity close to the cutoff, a damping function was
used to interpolate the values computed within the two ranges of frequencies.
To recover the systematic error due to the methodology and to the
anharmonic nature of the O–H vibration, simulated O–H
harmonic stretching frequencies were scaled for a proper factor calculated
aswhere νsym,exp and νasym,exp are the experimental symmetric and antisymmetric
stretching of the
isolated water molecule as taken from NIST, while νsym,comp and νasym,comp are the calculated ones in the harmonic approximation
with the present methodology, on a geometry optimized single water
molecule in a unit cell of a = 20 Å, b = 20 Å, and c = 20 Å, to ensure
negligible lateral interactions among water replicas. The final scaled
water monomer stretching frequencies are 3761 and 3652 cm–1, for the symmetric/antisymmetric modes. The bending mode at 1585
cm–1 was obviously unscaled. For the prediction
of the infrared spectra for the considered adsorption cases, we ensure
that the scaling was only applied to vibrational modes involving the
OH stretching only.Visualization and manipulation of the structures
and figures rendering
have been done with the MOLDRAW,[37] VMD,[38] and POVRAY[39] programs.
Results
Molecular Water Adsorption
To study
the weathering process of schreibersite, the interaction of water
was only modeled on the (110) most stable schreibersite surface, as
characterized in our recent work.[23] The
adsorption of water was simulated at different surface coverage regimes,
from a single water molecule to the monolayer up to a thin liquid
water multilayer.Bader charge analysis in Table reveals that, among the outermost
atoms of the (110) schreibersite surface, Fe is the only one with
a weakly positive charge (0.327 |e|), Ni preserves its atomic nature
(the charge being almost zero), while P brings a negative charge (−0.577
|e|). In view of these results, the adsorption of a water molecule
is expected to take place through the electrostatic complementarity
principle, that is, its O (−1.178 |e|) atom will likely be
adsorbed on the surface of Fe atoms through its lone pairs (electrostatic
plus charge transfer), while the H atoms (0.584 |e|) will interact
with P atoms through a weak H-bond.
Table 1
Bader Charge Analysis
of All the Studied
Systemsa
molecular
water
deprotonated
water
atom
net charge
charge diff
net transfer
atom
net charge
charge diff
(110)
Fe/NiH-FeOH
P
–0.577
H–Fe_Ni
–0.240
–0.824
Fe
0.327
H–OH
0.579
–0.005
Ni
–0.043
O
–1.023
0.145
H2O gas
Fe29–H
0.420
0.093
O
–1.168
Ni76–H
0.065
0.108
H
0.584
Fe28–OH
0.677
0.350
H2O–Ni 1×1
FeH-Fe/Ni–OH
H
0.595
0.011
0.017
H–Fe
–0.167
–0.750
H
0.629
0.045
H–OH
0.565
–0.019
O
–1.206
–0.038
O
–1.073
0.095
Ni
0.125
0.169
Fe28–H
0.285
–0.042
P10
–0.651
–0.074
Fe29–OH
0.591
0.265
P11
–0.638
–0.061
Ni76–OH
0.275
0.319
H2O–Ni 2×1
Fe/NiH-POH
H
0.616
0.032
0.033
H–OH
0.593
0.009
H
0.613
0.029
H–Fe_Ni
–0.257
–0.841
O
–1.196
–0.028
O
–1.302
–0.134
Ni
0.170
0.213
P–OH
0.301
0.878
P10
–0.641
–0.064
Fe41–H
0.428
0.101
P11
–0.607
–0.030
Ni82–H
–0.035
0.009
H2O–Ni 2×2
Fe/NiH-POH_2
H
0.604
0.020
0.040
H–Fe
–0.249
–0.833
H
0.611
0.027
H–OH
0.617
0.033
O
–1.175
–0.007
O
–1.298
–0.130
Ni
0.174
0.217
P–OH
0.233
0.810
P10
–0.639
–0.061
Fe29–H
0.385
0.059
P11
–0.616
–0.039
Ni76–H
0.039
0.083
H2O–Fe 1×1
Fe/NiH-POH_3
H
0.605
0.021
–0.012
H–Fe
–0.242
–0.826
H
0.606
0.022
H–OH
0.608
0.024
O
–1.223
–0.055
O
–1.291
–0.123
Fe
0.455
0.128
P–OH
0.333
0.910
P7
–0.584
–0.007
Fe53–H
0.359
0.032
P8
–0.600
–0.022
Ni89–H
0.025
0.068
H2O–Fe 2×1
PH-Ni/FeOH
H
0.604
0.020
0.010
H–P
–0.325
–0.909
H
0.615
0.031
H–OH
0.568
–0.016
O
–1.209
–0.041
O
–1.085
0.083
Fe
0.467
0.140
P–H
–0.082
0.495
P4
–0.586
–0.009
Fe40-OH
0.590
0.263
P5
–0.626
–0.049
Ni82-OH
0.157
0.201
H2O–Fe 2×2
PH-Ni/FeOH_2
H
0.597
0.013
0.014
H–P
–0.393
–0.977
H
0.589
0.005
H–OH
0.597
0.013
O
–1.171
–0.004
O
–1.115
0.053
Fe
0.470
0.144
P–H
–0.032
0.545
P4
–0.602
–0.025
Fe40–OH
0.565
0.238
P17
–0.620
–0.042
Ni82–OH
0.217
0.260
Net
charge, charge difference,
and net transfer are in units of the electron charge and calculated
as differences between charges of the actual system with respect to
the corresponding bare system. In the “atom” column,
the notation X–Y means that the reported charge is relative
to atom X, which is bound to atom Y.
Net
charge, charge difference,
and net transfer are in units of the electron charge and calculated
as differences between charges of the actual system with respect to
the corresponding bare system. In the “atom” column,
the notation X–Y means that the reported charge is relative
to atom X, which is bound to atom Y.
Single Water Adsorption
Figure reports the structures
of water adsorbed on the unit cell of the schreibersite (110) slab
(a = 4.374 Å, b = 6.719 Å,
γ = 108.99°) and their corresponding adsorption energies.
Surprisingly, the most stable adsorption mode (i.e., the one which
presents the smallest adsorption energy) is for H2O–Ni
(−37.6 kJ/mol, Figure a), in contrast with what was expected by adopting the naïve
electrostatic complementarity principle. We ascribe this unexpected
stabilization to the d8 electron configuration
of the atomic Ni, which allows for the electron pair donation of the
water O atom toward Ni unfilled d orbitals, thus,
almost filling up completely the d manifold. This
justifies the additional stabilization with respect to water adsorption
on Fe (−29.1 kJ/mol), whose d block is still
incomplete, even after water adsorption. Table shows that charge transfer effects are rather
subtle to rationalize. Upon adsorption, the system does not present
a significant charge transfer character between the adsorbate and
the surface, the difference in the atomic charges of the adsorbed
water molecule being negligible with respect to the isolated one.
In contrast, the charge on the Ni atom increases by 0.17 |e|. All
this means that the water molecule does not exert a direct effect
on the electronic structure of schreibersite; instead, its adsorption
affects the coordination geometry of Ni, which ultimately produces
a slight rearrangement in the global electronic structure of the surface.
Figure 1
PBE-D*0
optimized structures of a single water molecule (a) and
(b), water monolayer (c), and water multilayer (d), in interaction
with the (110) schreibersite surface. Atoms color legend: H is in
white, O is in red, P is in yellow, Fe is in light gray, and Ni is
in dark gray, and the unit cell in blue. In round parentheses is the
adsorption energy per water molecule in kJ/mol. In square and curly
parentheses are the adsorption enthalpy and free energy at 125/298
K. Italic numbers in section (d) are computed using the water bulk
as a reference. Distances are in Å.
PBE-D*0
optimized structures of a single water molecule (a) and
(b), water monolayer (c), and water multilayer (d), in interaction
with the (110) schreibersite surface. Atoms color legend: H is in
white, O is in red, P is in yellow, Fe is in light gray, and Ni is
in dark gray, and the unit cell in blue. In round parentheses is the
adsorption energy per water molecule in kJ/mol. In square and curly
parentheses are the adsorption enthalpy and free energy at 125/298
K. Italic numbers in section (d) are computed using the water bulk
as a reference. Distances are in Å.
Single Water Adsorption: Coverage Effect
For a single water molecule adsorption at the (110) schreibersite
surface, the lateral interaction with water adsorbed in the neighboring
cells appeared to be small from the perspective of the interwater
distances. Nevertheless, we checked this effect by enlarging the original
adsorption cell to 2 × 1 and 2 × 2 supercells, simulating
a lower water coverage. As Figure shows, for both adsorptions on the Ni and Fe sites,
the O–H bond distances are almost unchanged as a function of
the different surface coverages, while the O–metal bond shortens
with the decrease in water loading, with a corresponding decrease
in the adsorption energy. This effect is less pronounced in the case
of the adsorption on Fe (see Figure , sections d and f) than on Ni (see Figure , sections a–c), the
O–Fe bond (2.407, 2.361, 2.347 Å, for the 1 × 1,
2 × 1, and 2 × 2 supercells, respectively) being longer
than the O–Ni bond (2.165, 2.124, and 2.115 Å). The adsorption
energies at the Fe site (−29.1/-27.6/–30.6 kJ/mol) are
less-dependent on the water loading and more erratic compared with
those computed at the Ni site (−37.6/–41.3/–45.1
kJ/mol). As already pointed out, despite the significant difference
in the O–metal bond, the effect on the O–H bond length
appears to be negligible.
Figure 2
PBE-D*0 optimized structures of isolated water
molecule adsorbed
on different supercell sizes and corresponding IR spectra. The experimental
spectrum is also shown. Adapted with permission from ref (17). Copyright 2017 ACS. Atoms
color legend: H is in white, O is in red, P is in yellow, Fe is in
light gray, and Ni is in dark gray, and the unit cell is in blue.
The blue spheres represent the removed water molecules to simulate
the decreased coverage. In round parentheses is the adsorption energy
per water molecule in kJ/mol. In square and curly parentheses are
the adsorption enthalpy and free energy at 125/298 K. Distances are
in Å.
PBE-D*0 optimized structures of isolated water
molecule adsorbed
on different supercell sizes and corresponding IR spectra. The experimental
spectrum is also shown. Adapted with permission from ref (17). Copyright 2017 ACS. Atoms
color legend: H is in white, O is in red, P is in yellow, Fe is in
light gray, and Ni is in dark gray, and the unit cell is in blue.
The blue spheres represent the removed water molecules to simulate
the decreased coverage. In round parentheses is the adsorption energy
per water molecule in kJ/mol. In square and curly parentheses are
the adsorption enthalpy and free energy at 125/298 K. Distances are
in Å.To check more carefully on the
bonding effects, we computed the
vibrational frequencies for all the considered supercell models. The
IR spectra of Figure show that (i) the symmetric/antisymmetric OH stretching of adsorbed
water suffers from a bathochromic shift by around 300 cm–1 with respect to the gas-phase molecule (vibrating at 3761/3652 cm–1); and (ii) the infrared intensities are also sensitive
to the water coverage and also to the metal (please compare spectra
for sections a–c with those of sections d–f). When adsorbed
on Ni, the water frequency bands are less affected by the decreasing
water coverage while showing a change in the relative infrared intensity.
Instead, when adsorbed at Fe site, the H2O–Fe_1×1
case (Figure d) shows
a definite larger bathochromic shift of both frequencies compared
to both the higher water coverage and when compared to the corresponding
Ni adsorption case H2O–Ni_1×1 (Figure a). Inspection of charge transfer
from data in Table revealed that, while for the Ni cases water always loses electronic
charge toward the surface, for Fe cases the charge flux is reversed
with respect to the Ni adsorption. While evaluating absolute charge
transfer is dependent on the adopted methodology, the present comparison
is meaningful, as it compares similar situations on closely related
systems. Indeed, an increased charge transfer toward water populates
the σ*(OH) orbital, hence, increasing the bathochromic shifts
of the OH related stretching frequencies, in agreement with theoretical
interpretation.[40] We also see that water
coverage decrease causes a hypsochromic shift of the OH vibrational
bands, thus, worsening the agreement with the experiment, particularly
for the Fe adsorption. This may be taken as an indication that the
experimental results of ref (17) are for a water surface coverage closer to the monolayer
rather than to the adsorption of well isolated water molecules.
Water Monolayer and Multilayer Adsorption
A water monolayer coverage was simulated by adsorbing up to three
water molecules on the surface unit cell, limiting our analysis to
the adsorption on the Ni site, as it is the most favorable one (Figure c). Results indicate
that only one out of three water molecules is in direct contact with
the Ni atom; the other water molecules prefer an interwater cooperative
H-bond interaction, rather than being adsorbed on the Fe atoms. The
cooperative H-bond interactions between water molecules, together
with the contribution from the water directly adsorbed at the Ni atom,
brings a more favorable adsorption energy per water molecule (−57.0
kJ/mol) compared to the single water adsorption case (−37.6
kJ/mol, vide supra).As the last step, we simulated a water
multilayer case (starting from the optimized geometry of the monolayer)
by completely filling in with water molecules the vacuum space among
the fictitious nonperiodic replicas of the schreibersite slab. The
starting geometry of water molecules was obtained with the Packmol
program.[41] The adsorption energy per water
molecule (−60.5 kJ/mol) is close to that of the monolayer (−57,0
kJ/mol), and both are similar to the reverse of the binding energy
per water molecule for the pure amorphous water bulk model (AE = −62.8
kJ/mol) [AH125/298 = −54.4/–56.1 kJ/mol]
{AG125/298 = −39.1/–19.5 kJ/mol}. This proves
that the effect of the schreibersite surface on a water multilayer
is rather moderate as their features are close to that of liquid water
models. Nevertheless, when we used as a reference the amorphous water
bulk instead of isolated water molecules, the adsorption process is
still slightly favorable, at least for enthalpy and free energy contributions
(AE = 2.3 kJ/mol) [AH125/298 = −4.2/–7.6
kJ/mol] {AG125/298 = −3.1/–10.0 kJ/mol} (see Figure d, italic numbers),
showing a role of the surface in dictating the energetic of adsorption.Figure shows the
anharmonic (scaled, vide supra) simulated infrared spectra of both
the water mono (Figure a) and multilayer cases (Figure b) in comparison with the experimental ones (taken
and adapted from ref (17) for water monolayer recorded at 125 K, and from ref (13) for water multilayer recorded
at 295 K). The simulated spectrum of water monolayer (Figure a) was built up by merging
the IR spectra of single water adsorptions (H2O–Ni
and H2O–Fe) in addition to the water monolayer (H2O–mono) to mimic the complex experimental coverage
in which different water patches may populate the surface simultaneously.
In contrast, the spectrum for the water multilayer case (Figure b) was simulated
using exclusively the water multilayer contributions, as there is
little ambiguity in controlling the coverage from the experiments.
For the monolayer case, the agreement with the experiment is good,
when considering the spectrum recorded at 125 K, despite some discrepancies
in the IR relative intensities related to the rocking modes of adsorbed
water. In ref (17),
the authors hypothesized the formation of a water multilayer despite
the maximum coverage of 1.0 Langmuir, characteristic of the water
monolayer. The main difference between mono- and multilayer experimental
spectra is a rather broad peak shown in Figure b (marked by an asterisk) at around 2423
cm–1, which was attributed by the authors of ref (17) to the formation of either
P–H and/or P–OH bonds (i.e., to the water dissociative
adsorption, see next section).[13] At low
temperatures, the predominant interaction was attributed to water
molecularly adsorbed on schreibersite, through a direct interaction
of the O atoms with the P atom of the surface. However, the present
atomistic simulation results are in full disagreement with that model
(vide supra), as we find that single water directly interacts with
the metal atoms, a phenomenon that can be explained on a simple electrostatic
base (vide supra). Any attempt to force the P–OH2 interaction by putting the water molecule close to the P atom resulted
in water promptly escaping from that position during geometry optimization.
The only way water will interact with the P atoms is by dissociative
adsorption, in which a new P–O bond is formed (vide infra).
Figure 3
Experimental
(red) and computed (blue) IR spectra. Black bars correspond
to the isolated water molecule normal modes. Green arrows represent
the motion of the vibrational modes. Atoms color legend: H is in white,
O is in red. (a) The experimental spectrum (1.0 Langmuir, 125 K recorded
T) is adapted with permission from ref (17). Copyright 2017 ACS. (b) The experimental spectrum
(100 Langmuir, 295 K recorded T) is adapted with permission from ref (13). Copyright 2016 Royal
Society of Chemistry.
Experimental
(red) and computed (blue) IR spectra. Black bars correspond
to the isolated water molecule normal modes. Green arrows represent
the motion of the vibrational modes. Atoms color legend: H is in white,
O is in red. (a) The experimental spectrum (1.0 Langmuir, 125 K recorded
T) is adapted with permission from ref (17). Copyright 2017 ACS. (b) The experimental spectrum
(100 Langmuir, 295 K recorded T) is adapted with permission from ref (13). Copyright 2016 Royal
Society of Chemistry.
Dissociative
Water Adsorption
Above,
only the molecular water was considered as a possible candidate toward
schreibersite (110) surface adsorption. In this section, we consider
the case of chemisorption, with the formation of metal–H/metal–OH
and P–H/P–OH surface features by water dissociative
adsorption. Figure shows the possible dissociative water adsorption modes on the 2
× 1 supercell of the (110) schreibersite. Dissociative adsorption
represents the very first step of the schreibersite corrosion process,
where oxidized forms of each surface species are formed, the most
important for biological processes being the P–O bond formation,
at the cost of heterolytically breaking one OH bond of water to give
OH– and H+.
Figure 4
PBE-D*0 optimized structure
of deprotonated water molecules adsorbed
on the (110) schreibersite surface. Atoms color legend: H is in white,
O is in red, P is in yellow, Fe is in light gray, and Ni is in dark
gray, and the unit cell in blue. In round parentheses, the dissociation
energy in kJ/mol is computed with respect to the most stable molecular
adsorption case (H2O–Fe_2×1) assumed as a reference.
In square parentheses the dissociation enthalpy at [125/298] K. Distances
are in Å.
PBE-D*0 optimized structure
of deprotonated water molecules adsorbed
on the (110) schreibersite surface. Atoms color legend: H is in white,
O is in red, P is in yellow, Fe is in light gray, and Ni is in dark
gray, and the unit cell in blue. In round parentheses, the dissociation
energy in kJ/mol is computed with respect to the most stable molecular
adsorption case (H2O–Fe_2×1) assumed as a reference.
In square parentheses the dissociation enthalpy at [125/298] K. Distances
are in Å.In this case, the supercell was
used to increase the water fragments
degrees of freedom at the (110) surface. We computed the deprotonation
energies (DE) shown in Figure by using, as a reference system, the energy of the most stable
molecular single water adsorption (H2O–Ni_2×1, Figure b). In all cases,
the water deprotonation at the surface is endothermic with respect
to the molecular adsorption case, therefore requiring relative high
temperatures to occur.The following possibilities were studied
here: (i) water deprotonation
on metal atoms, that is, both the H and OH groups on Ni and Fe (Figure a,b); (ii) OH group
on phosphorus and H on metal atoms (Figure c); and (iii) OH group on metal atoms and
H on phosphorus (Figure d; more cases in the SI). The stability
ranking is clear: the most stable situation happens when both metal
atoms are saturated (i.e., both H and OH on Fe and Ni, and vice versa, Figure a,b) with almost
indistinguishable DE values, followed by the hydroxylation of phosphorus
(OH on P, H on Fe or Ni, Figure c), and the least stable cases are the hydriding of
phosphorus (OH on Fe or Ni, H on P, Figure d).In contrast to the adsorption of
molecular water, the deprotonation
leads to a strong electronic rearrangement of the surface due to the
proton attachment, which reduces to a hydride ion, with an average
charge of −0.27 |e|. Figure a and b show the water dissociation at Fe and Ni to
have the same DE (around 29 kJ/mol). In contrast, the formation of
the P–H bonds destabilizes the systems (Figure d, DE = 70.5 kJ/mol), while hydroxylation
on P leads to moderately stable structures (Figure c, DE = 35.6 kJ/mol), especially when considering
the remarkable strength of the P–O bond. Therefore, our results
show that, at low temperatures, water deprotonation is not thermodynamically
favored. As a further confirmation of our findings, Figure shows the computed spectra
of all the adsorption modes with deprotonated water (as shown in Figure ) in comparison with
the experimental one for the water monolayer case. As one can see,
all the computed vibrational modes of deprotonated water are qualitatively
different with respect to the experimental spectrum, thus, indicating
that it is unlikely that water undergoes deprotonation at low temperatures
on the (110) surface.
Figure 5
IR spectra of adsorbed deprotonated water on (110) schreibersite.
Green arrows represent the motion of the vibrational modes. Atoms
color legend: H is in white, O is in red, P is in yellow, Fe is in
light gray, and Ni is in dark gray. The experimental spectrum (1.0
Langmuir, 125 K recorded T) is adapted with permission from ref (17). Copyright 2017 ACS.
IR spectra of adsorbed deprotonated water on (110) schreibersite.
Green arrows represent the motion of the vibrational modes. Atoms
color legend: H is in white, O is in red, P is in yellow, Fe is in
light gray, and Ni is in dark gray. The experimental spectrum (1.0
Langmuir, 125 K recorded T) is adapted with permission from ref (17). Copyright 2017 ACS.This is also confirmed by the experimental spectra
of Figure , where
in the case
of the multilayer water adsorption at room temperature (Figure b) a new peak rises at 2423
cm–1, which is not present in Figure a, where the adsorption is studied at low
temperature (125 K). As already pointed out, this was originally assigned
to P–H/P–OH stretching, and, accordingly, to water deprotonated
at the surface. Considering gas phase phosphonic acid (HP(O)OH2), the P–H bond vibrates indeed at 2487 cm–1,[42] and it could, in principle, explain
the peak at 2423 cm–1, while the stretching associated
with P–OH group falls at the lower frequency (below 1000 cm–1). However, in the case of schreibersite, phosphorus
has a completely different chemical environment than the simpler phosphonic
acid. According to our results, P–H vibration represented in Figure d is located at 2204
cm–1 (without anharmonic correction, which would
further cause a bathochromic shift of the peak), which is quite different
with respect to the experimental interpretation and, accordingly,
can be excluded as origin of the observed band. Nonetheless, Figure b, shows that the
position and relative intensity of the 2432 cm–1 band is correctly reproduced by our simulations. A deeper analysis
of the structure associated with this particular feature indicates
that it belongs to an incipient proton transfer between two water
molecules in close contact (O1H1···O2 of the pair is
1.491 Å, O1–H1 1.047 Å, see Figure d) with the schreibersite surface, rather
than a newly formed covalent bond with the surface. In that configuration,
a proton shuttle between the two oxygen atoms causes a very large
bathochromic shift of the original OH stretching bands, as the proton
is loosely bound vibrating at 2407 cm–1. This value
is also in agreement with the value of the frequency associate to
an OH bond belonging to the H3O+ moiety formed
in an acidic chabazite engaged in a hydrogen bond with a neighbor
water molecule.[43] We are, however, suspicious
about the robustness of the value computed for this vibration, as
incipient proton transfer are difficult to be correctly treated by
the level of theory adopted here. Indeed, the PBE functional underestimates
the OH bond strength in H-bonding interactions giving too loosely
bound protons and exceedingly large bathochromic OH shifts. The extreme
consequence is a biased easier formation of ion pairs (H3O+/OH–) in a liquid water simulation
than it should be.[44] To further study that
feature, a PBE-D*0 molecular dynamics simulation at 300 K was performed
for 1 ps and the final structure was then reoptimized followed by
an harmonic frequency calculation. The above-mentioned feature does
not disappear, meaning that, according to PBE-D*0, the formation of
such ion pair (H3O+/OH–) is
stable, at least within the very short MD simulation (longer ones
are too demanding for our computational facilities). To clarify the
dependence of the results on the adopted functional, we reoptimize
the PBE-D*0 optimized structure with the BLYP-D*0 functional, followed
by a harmonic frequency calculation: as expected, the BLYP functional
increases the intermolecular H-bond distance with respect to the PBE
(O1H1···O2 from 1.491 to 1.562 Å), while the intramolecular
OH bonds strength is shortened (O1–H1 decreases from 1.047
to 1.029 Å). As a direct consequence, the peak moves to higher
wavenumbers (from 2408 to 2649 cm–1) getting closer
to the main OH stretching manifold band. As a further check, we also
carried out BLYP optimization and frequency calculations on the PH-Ni/FeOH
structure (see Figure d of the main text). The P–H stretching slightly decreases
from 2205 cm–1 (PBE-D*0 value) to 2190 cm–1 (BLYP-D*0 value), showing that, in contrast to the O–H stretching,
the vibration of the P–H moiety is far less affected by the
adopted functional, giving confidence to the PBE-D*0 result for that
specific band. In conclusion, we cannot exclude the experimental vibrational
feature at 2423 cm–1 as due to the formation of
an incipient H3O+/OH– ion
pair at the schreibersite surface, in agreement with the fact that,
at variance with its absence for a water monolayer, water multilayers
are needed to stabilize the ion pair at the schreibersite interface.
However, it has to be established whether this spectroscopic feature
can be accounted for by less fancy chemical situations, when water
will be studied in interaction with the most reactive (001) surface
with a most probable stabilization of chemisorbed water over the physisorbed
state. Indeed, water chemisorption may result in a deep surface corrosion
exposing moieties similar, in the spectral character, to the phosphonic
acid (HP(O)OH2), with the P–H vibrating at a frequency
close to that experimentally observed.
Conclusions
In the present work, the adsorption of water on the most stable
(110) surface of schreibersite was modeled by means of periodic calculations
using plane waves and the PBE-D*0 approach. We consider different
surface water coverage, from single water molecule per unit cell,
to monolayer (1 Langmuir) up to a multilayer case. For the single
water molecule case, we reached almost zero coverage by enlarging
the surface unit cell area. For the multilayer, we fill in the empty
space between surface replicas (about 20 Å), reaching a water
density close to 1 g/cm3.Adsorption energy shows
that water, when molecularly adsorbed,
binds preferentially through an O–metal bond to Ni (−37.6
kJ/mol) and less so to Fe (−29.1 kJ/mol) atoms, both sites
acting as electron acceptor of the O electron pairs, stabilized by
electronic (Ni reach a d10 configuration) and electrostatic
(Fe brings a partial positive charge) effects, respectively. In contrast,
the interaction with phosphorus is through a very weak H-bond, in
which water acts as a hydrogen donor. The IR spectra corresponding
to the adsorption of one water molecule per unit cell revealed a weak
dependence of the OH stretching bands when the water coverage reached
the limit of zero coverage. The most relevant change occurred for
the adsorption at Fe atom on the original smallest unit cell, where
an increased charge transfer from the surface toward the water molecule
causes a larger OH stretching bathochromic shift than that for the
cases of smaller water coverage. Spectra of the monolayer case is
in general good agreement with the experimental one recorded at 125
K. For the multilayer case, the experimental spectrum revealed a prominent
band at 2423 cm–1, which was attributed by the authors
by water chemisorption forming either P–H or P–OH groups.
Our simulated spectrum revealed a feature at 2408 cm–1 due to the incipient (H3O+/OH–) pair, only present when water multilayer was considered. While
we can exclude the P–H/P–OH attribution, we cannot exclude
this computed feature to be due to a specific arrangement of the water
molecules adopted to simulate the multilayer or to artifacts in the
adopted PBE-D*0 functional, which tends to give a too weak OH bond
when engaged in a hydrogen bond.The deprotonation of water
on the (110) surface was studied for
the case of a single water molecule per unit cell: the process is
thermodynamically unfavorable, being endothermic (around 29 kJ/mol)
with respect to the most stable molecular adsorption case.Work
is in progress to extend the study to water adsorption on
the most reactive (001) face, which will provide a more complete picture
of the role of water chemisorption, a more robust rationalization
of the 2423 cm–1 band in terms of surface attached
species containing the P–H feature and paths for the formation
of phosphates.
Authors: Nikita L La Cruz; Danna Qasim; Heather Abbott-Lyon; Claire Pirim; Aaron D McKee; Thomas Orlando; Maheen Gull; Danny Lindsay; Matthew A Pasek Journal: Phys Chem Chem Phys Date: 2016-07-27 Impact factor: 3.676
Authors: Maheen Gull; Mike A Mojica; Facundo M Fernández; David A Gaul; Thomas M Orlando; Charles L Liotta; Matthew A Pasek Journal: Sci Rep Date: 2015-11-26 Impact factor: 4.379