Literature DB >> 35141413

Complete mitochondrial genome of giant cricket Tarbinskiellus portentosus (Orthoptera: Gryllinae) and phylogenetic analysis.

Cheng-Ye Wang1,2, Pan-Li Yang1,2,3, Zhao He1,2, Long Sun1,2, Min Zhao1,2, Ying Feng1,2.   

Abstract

Tarbinskiellus portentosus (Lichtenstein, 1796) is an agricultural and forestry pest, but people in some places use it as a delicacy. The complete mitogenome of T. portentosus (GenBank accession number MZ427921) is 15, 498 bp in size, including 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs genes, and a noncoding A + T-rich region. The A + T-rich region is located between 12S rRNA and tRNAIle . The base composition of the whole T. portentosus mitogenome is 40.62% for A, 9.87% for G, 32.20% for T, and 17.31% for C, with a high AT content of 72.82%. The phylogeny analysis indicated that T. portentosus had a close relationship with Cardiodactylus muiri. The present data could contribute to further detailed diversity and phylogeographic analysis for this edible cricket.
© 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Mitogenome; Tarbinskiellus portentosus; edible cricket; phylogeny

Year:  2022        PMID: 35141413      PMCID: PMC8820803          DOI: 10.1080/23802359.2022.2030819

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


Tarbinskiellus portentosus (Lichtenstein, 1796), with the common names of short-tail or giant cricket, is an agricultural and forestry pest, but people in some places use it as a delicacy (Soren et al. 2021). T. portentosus belongs to Orthoptera: Grylloidea: Gryllidae (Myers et al. 2021). The protein content of the adult T. portentosus is 58%, which made it a potential edible insect (Magara et al. 2020). T. portentosus belongs to Orthoptera: Gryllidae: Gryllinae, and the reported distribution including China, India, Malaya, Myanmar, Nepal, Pakistan, and Vietnam (Cigliano et al. 2020). Elucidating the sequence and structure of T. portentosus mitogenome is important for diversity and phylogeographic analysis of this edible cricket. The specimen of T. portentosus in this work was obtained from Baise, Guangxi, China (N 23°25′, E 106°38′), and deposited in the insect specimen room (contact person: Cheng-Ye Wang, email: cywang11@126.com) of Research Institute of Resource Insects with voucher number RIRI-w-20200730. Sequencing work of the complete mitogenome of T. portentosus was performed by Illumina Nextseq500 in Beijing Microread Genetics Co., Ltd., with a total data volume 4 G (150 bp Reads). High-quality reads were assembled from scratch using IDBA-UD and SPAdes (Bankevich et al. 2012; Peng et al. 2012). Protein-coding genes (PCGs) of the T. portentosus mitogenome were identified using BLAST search in NCBI, and tRNA genes were identified using the tRNAscan-SE search server (Schattner et al. 2005). The final assembled mitogenome was also verified on the MITOS web server (Bernt et al. 2013). The T. portentosus mitogenome is 15,498 bp in size (GenBank accession number MZ427921), including 13 typical invertebrate PCGs, 22 transfer RNA genes, two ribosomal RNA genes, and a noncoding control region (A + T-rich). The A + T content of the whole T. portentosus mitogenome is 72.82%, showing an obvious AT mutation bias (Nguyen et al. 2020). The A + T-rich region exhibits the highest A + T content (77.58%) in the T. portentosus mitogenome. All the 13 PCGs, 11 PCGs use standard ‘ATN’ as start codons. COX1 use ‘TCG’ as start codon, and ND1 use ‘TTG’ as start codon. As to the stop codon, COX3 and ND5 use ‘T’ as stop codons, and the reminding 11 PCGs have the common mitochondrial stop codon ‘TAA’. Among the 22 tRNAs, 19 tRNAs could be folded into the typical cloverleaf secondary structures; while, tRNA had completely lost the dihydrouridine (DHU) stem; tRNA and tRNA had lost the TφC loop. The 12S rRNA gene is located between the A + T-rich region and tRNA, while the 16S rRNA is located between tRNA and tRNA. Based on the concatenated PCGs sequences, the maximum-likelihood method was used to construct the phylogenetic relationship between T. Portentosus and 18 other Gryllinae species, with two Gryllotalpinae species used as outgroups (Figure 1). The phylogenetic analysis was conducted using MEGA version X (Kumar et al. 2018). Potential substitution saturation of PCGs data set was assessed using DAMBE5 software (Xia 2018), and the outcome (Iss (0.072) < Iss.c (0.784), p < .05) indicated that the substitutions between sequences did not reach saturation and the sequences can be used for subsequent phylogenetic analysis. The phylogeny analysis indicated that T. portentosus had a close relationship with Cardiodactylus muiri (Figure 1), which add new information to the evolutionary lineage research of T. portentosus (Tantrawatpan et al. 2011; He et al. 2020; Pradit et al. 2021). This mitogenome data might be also valuable for further phylogeography analyses for this edible cricket.
Figure 1.

Phylogenetic tree showing the relationship between T. portentosus and 18 other Gryllinae species based on maximum-likelihood method performed using 500 bootstrap replicates. Two Gryllotalpinae species (Gryllotalpa orientalis and G. pluvialis) were used as outgroups. GenBank accession numbers of each sequence were listed in the tree behind their corresponding species names.

Phylogenetic tree showing the relationship between T. portentosus and 18 other Gryllinae species based on maximum-likelihood method performed using 500 bootstrap replicates. Two Gryllotalpinae species (Gryllotalpa orientalis and G. pluvialis) were used as outgroups. GenBank accession numbers of each sequence were listed in the tree behind their corresponding species names.
  10 in total

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Authors:  Yu Peng; Henry C M Leung; S M Yiu; Francis Y L Chin
Journal:  Bioinformatics       Date:  2012-04-11       Impact factor: 6.937

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  Genetic differentiation among populations of Brachytrupes portentosus (Lichtenstein 1796) (Orthoptera: Gryllidae) in Thailand and the Lao PDR: the Mekong River as a biogeographic barrier.

Authors:  C Tantrawatpan; W Saijuntha; W Pilab; K Sakdakham; P Pasorn; S Thanonkeo; R Satrawaha; T Petney
Journal:  Bull Entomol Res       Date:  2011-05-04       Impact factor: 1.750

4.  Report of a new genus Mirigryllus belonging to tribe Modicogryllini, with a new species M. nigrus from Zhejiang, China (Orthoptera: Gryllidae: Gryllinae: Modicogryllini).

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5.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

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Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

6.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

7.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution.

Authors:  Xuhua Xia
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

Review 9.  Edible Crickets (Orthoptera) Around the World: Distribution, Nutritional Value, and Other Benefits-A Review.

Authors:  Henlay J O Magara; Saliou Niassy; Monica A Ayieko; Mukundi Mukundamago; James P Egonyu; Chrysantus M Tanga; Emily K Kimathi; Jackton O Ongere; Komi K M Fiaboe; Sylvain Hugel; Mary A Orinda; Nanna Roos; Sunday Ekesi
Journal:  Front Nutr       Date:  2021-01-12

10.  Evolution of a Record-Setting AT-Rich Genome: Indel Mutation, Recombination, and Substitution Bias.

Authors:  Duong T Nguyen; Baojun Wu; Shujie Xiao; Weilong Hao
Journal:  Genome Biol Evol       Date:  2020-12-06       Impact factor: 3.416

  10 in total

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