| Literature DB >> 35140748 |
Mingzhu Huo1,2,3,4, Yile Zhang1,2,3,4, Senlin Shi1,2,3,4, Hao Shi1,2,3,4, Yidong Liu1,2,3,4, Lingyun Zhang1,2,3,4, Yanchi Wang1,2,3,4, Wenbin Niu1,2,3,4.
Abstract
Background: Oocyte maturation arrest is a disease that produces immature oocytes and cannot be mature after culturing in vitro, which leads to female primary infertility. We aimed to summarize nine representative patients in our center to retrospectively analyze the genetic variants and clinical characteristics of oocyte maturation arrest.Entities:
Keywords: clinical phenotype; female infertility; genetic variants; oocyte maturation arrest; zona pellucida
Year: 2022 PMID: 35140748 PMCID: PMC8819080 DOI: 10.3389/fgene.2022.772143
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1Phenotypes of oocytes from patients with maturation arrest. (A) Oocyte at GV (family 1). (B) Oocyte at MI (family 5). (C) Oocyte at MII (family 9). (D) Oocyte without ZP (family 7).
Clinical characteristics of patients and their retrieved oocytes.
| Family | Age (years) | Duration of infertility (years) | Previous IVF/ICSI cycles | Total no. of oocytes retrieved | GV oocyte | MI oocyte | MII oocyte | Oocyte with abnormal morphology | Immature oocyte (unknown stage) | No. of usable embryos |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 (I458M) | 32 | 10 | 3 | 52 | 49 | 2 | 0 | 0 | 0 | 0 |
| (L430del) | ||||||||||
| 2 (V179M) | 31 | 3 | 2 | 5 | 0 | 5 | 0 | 0 | 0 | 0 |
| 3 (V229A) | 30 | 8 | 1 | 6 | 2 | 4 | 0 | 0 | 0 | 0 |
| 4 (V179M) | 42 | 12 | 2 | 12 | 0 | 7 | 0 | 1 | 4 | 0 |
| 5 (S176W) | 28 | 7 | 2 | 31 | 1 | 28 | 0 | 0 | 2 | 0 |
| 6 (Q292*) | 27 | 6 | 2 | 7 | 4 | 1 | 0 | 2 | 0 | 1 |
| 7 (A134T) | 33 | 3 | 2 | 3 | 0 | 1 | 0 | 2 | 0 | 0 |
| 8 (P515S) | 32 | 4 | 2 | 20 | 14 | 5 | 0 | 1 | 0 | 0 |
| 9 (V255M) | 31 | 2 | 1 | 10 | 0 | 9 | 1 | 0 | 0 | 0 |
IVF, in vitro fertilization; ICSI, intracytoplasmic sperm injection; GV, germinal vesicle; MI, metaphase I; MII, metaphase II.
FIGURE 2Genotypic features of family 1. (A) Pedigrees of family 1 with female infertility. Sanger sequencing confirmation is shown on the right of the pedigrees. The “=” sign indicates infertility, and black circles represent affected individuals. The “W” sign means wild type. (B) The positions of the novel mutations are indicated in the corresponding amino acids shown on the PATL2 protein. (C) Preservative mutation analysis for the novel sites in different species.
The evidence item description according to ACMG.
| Family | Variant | Gene | Interpretation | Conclusion |
|---|---|---|---|---|
| 1 | c.1374A > G: p. I458M |
| PM1 | Likely pathogenic |
| 1 | c.1289_1291delTCC: p. L430del |
| PM1 + PM2 + PM4 | Likely pathogenic |
| 2 | c.535G > A: p. V179M |
| PM1 + PM2 + PP2 | Uncertain significance |
| 3 | c.686T > C: p. V229A |
| PM1 + PM2 + PP2 + PS3 | Pathogenic |
| 4 | c.535G > A: p. V179M |
| PM1 + PM2 + PP2 | Uncertain significance |
| 5 | c.527C > G: p. S176W |
| PM1 + PM2 + PP2 + PM5 | Likely pathogenic |
| 6 | c.874C > T: p. Q292* |
| PVS1 | Pathogenic |
| 7 | c.400G > A: p. A134T |
| PS3+PS4_Supporting | Pathogenic |
| 8 | c.1543C > T: p. P515S |
| PM2 | Uncertain significance |
| 9 | c.763G > A: p. V255M |
| PS4_Supporting + PM2+PM6 | Likely pathogenic |
Note: the phenotype in the patient matches the gene’s disease association with reasonable specificity.
Note: pathogenicity classification has been made from a reputable source.
The variation is located in a mutational hot spot.
The frequency of the variant is less than 0.01 or absent from gnomAD, 1000 Genome Program, and ExAC databases.
Missense variant in a gene that has a low rate of benign missense variation and where missense variants are a common mechanism of disease.
Patient’s phenotype or family history is highly specific for a disease with a single genetic etiology.
Protein length changes due to in-frame deletions in a non-repeat region or stop-loss variants.
Well-established in vitro or in vivo functional studies supportive of a damaging effect on the gene.
Co-segregation with a disease in multiple affected family members in a gene definitively known to cause the disease.
Novel missense change at an amino acid residue where a different missense change determined to be pathogenic has been seen before.
The nonsense variant in a gene where loss of function is a known disease mechanism.
For recessive disorders, detected in trans with a pathogenic variant.
The prevalence of the variant in affected individuals is significantly increased compared to the prevalence in controls.
Co-segregation with disease in multiple affected family members in a gene definitively known to cause the disease. Note: it has stronger evidence with increasing segregation data.
Assumed de novo, but without confirmation of paternity and maternity.
Overview of related mutations in the 9 families.
| Family | Gene | Genomic coordination | cDNA change | Protein change | Variant type | Inheritance | PROVEAN | PolyPhen-2 | SIFT | ExAC (total) | ExAC (East Asian) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |
| chr15:44959393 | c.1374A > G | p. Ile458 Met | Missense | AR | N | PD | N | NA | NA |
| 1 |
| chr15:44960613-44960616 | c.1289_1291delTCC | p. Leu430del | In-frame deletion | AR | D | NA | NA | NA | NA |
| 2 |
| chr10:93797 | c.535G > A | p. Val179Met | Missense | AD/AR | D | PD | D | 8.322e-06 | 0 |
| 3 |
| chr10:93646 | c.686T > C | p. Val229 Ala | Missense | AD/AR | D | PD | D | NA | NA |
| 4 |
| chr10:93797 | c.535G > A | p. Val179Met | Missense | AD/AR | D | PD | D | 8.322e-06 | 0 |
| 5 |
| chr10:93805 | c.527C > G | p. Ser176Trp | Missense | AD/AR | D | PD | D | NA | NA |
| 6 |
| chr11:60638477 | c.874C > T | p. Gln292 | Nonsense | AR | D | NA | NA | 8.238e-05 | 0.0001 |
| 7 |
| chr7:76058 919 | c.400G > A | p. Ala134Thr | Missense | AD | D | PD | D | NA | NA |
| 8 |
| chr16:21212841 | c.1543C > T | p. Pro515Ser | Missense | AR/AD | D | PD | NA | NA | NA |
| 9 |
| chr10:93569 | c.763G > A | p. Val255Met | Missense | AD/AR | N | PD | D | 6.77e-05 | 0 |
AD, autosome dominant; AR, autosome recessive; N, neutral; D, deleterious; NA, not available.
Variant effect predicted by PROVEAN.
Variant effect predicted by PolyPhen-2.
Variant effect predicted by SIFT.
Frequency of corresponding variants in the total and East Asian population of ExAC.
OMIM database shows that ZP2 follows a recessive inheritance pattern and a recent study found it was also inherited in an autosomal dominant pattern (Yang et al., 2021).
FIGURE 3Pedigrees of 5 families with TUBB8 variants. Sanger sequencing confirmation is shown on the right of the pedigrees. The “=” sign indicates infertility, and black circles represent affected individuals. The “W” sign means wild type, and question marks indicate the absence of a DNA sample. (A–E) represent different families.
FIGURE 4Genotypic features of ZP1 ∼ 3. (A–C) Pedigrees of the families with ZP1 ∼ 3 variants. Sanger sequencing confirmation is shown on the right of the pedigrees. The “=” sign indicates infertility, and black circles represent affected individuals. The “W” sign means wild type, and question marks indicate the absence of a DNA sample. (D) Preservative mutation analysis for the novel site of ZP2 in different species. (E) The position of the novel mutation is indicated in the corresponding amino acids shown on the ZP2 protein.