Literature DB >> 35134345

The Lipid Droplet Knowledge Portal: A resource for systematic analyses of lipid droplet biology.

Niklas Mejhert1, Katlyn R Gabriel2, Scott Frendo-Cumbo3, Natalie Krahmer4, Jiunn Song5, Leena Kuruvilla6, Chandramohan Chitraju5, Sebastian Boland5, Dong-Keun Jang7, Marcin von Grotthuss7, Maria C Costanzo7, Mikael Rydén3, James A Olzmann8, Jason Flannick9, Noël P Burtt7, Robert V Farese10, Tobias C Walther11.   

Abstract

Lipid droplets (LDs) are organelles of cellular lipid storage with fundamental roles in energy metabolism and cell membrane homeostasis. There has been an explosion of research into the biology of LDs, in part due to their relevance in diseases of lipid storage, such as atherosclerosis, obesity, type 2 diabetes, and hepatic steatosis. Consequently, there is an increasing need for a resource that combines datasets from systematic analyses of LD biology. Here, we integrate high-confidence, systematically generated human, mouse, and fly data from studies on LDs in the framework of an online platform named the "Lipid Droplet Knowledge Portal" (https://lipiddroplet.org/). This scalable and interactive portal includes comprehensive datasets, across a variety of cell types, for LD biology, including transcriptional profiles of induced lipid storage, organellar proteomics, genome-wide screen phenotypes, and ties to human genetics. This resource is a powerful platform that can be utilized to identify determinants of lipid storage.
Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  C16orf54; MSRB3; inflammation; proteasome; protein targeting; proximity labeling; sterol ester; triacylglycerol

Mesh:

Substances:

Year:  2022        PMID: 35134345      PMCID: PMC9129885          DOI: 10.1016/j.devcel.2022.01.003

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   13.417


  50 in total

1.  Wnt directs the endosomal flux of LDL-derived cholesterol and lipid droplet homeostasis.

Authors:  Cameron C Scott; Stefania Vossio; Fabrizio Vacca; Berend Snijder; Jorge Larios; Olivier Schaad; Nicolas Guex; Dmitry Kuznetsov; Olivier Martin; Marc Chambon; Gerardo Turcatti; Lucas Pelkmans; Jean Gruenberg
Journal:  EMBO Rep       Date:  2015-04-07       Impact factor: 8.807

2.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

Review 3.  Lipid droplets and cellular lipid metabolism.

Authors:  Tobias C Walther; Robert V Farese
Journal:  Annu Rev Biochem       Date:  2012-04-13       Impact factor: 23.643

4.  Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast.

Authors:  Weihua Fei; Guanghou Shui; Bruno Gaeta; Ximing Du; Lars Kuerschner; Peng Li; Andrew J Brown; Markus R Wenk; Robert G Parton; Hongyuan Yang
Journal:  J Cell Biol       Date:  2008-02-04       Impact factor: 10.539

Review 5.  Lipid droplets and liver disease: from basic biology to clinical implications.

Authors:  Nina L Gluchowski; Michel Becuwe; Tobias C Walther; Robert V Farese
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2017-04-21       Impact factor: 46.802

6.  Dual role of ancient ubiquitous protein 1 (AUP1) in lipid droplet accumulation and endoplasmic reticulum (ER) protein quality control.

Authors:  Elizabeth J Klemm; Eric Spooner; Hidde L Ploegh
Journal:  J Biol Chem       Date:  2011-08-20       Impact factor: 5.157

7.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

Review 8.  Lipid droplets: platforms with multiple functions in cancer hallmarks.

Authors:  André L S Cruz; Ester de A Barreto; Narayana P B Fazolini; João P B Viola; Patricia T Bozza
Journal:  Cell Death Dis       Date:  2020-02-06       Impact factor: 8.469

9.  Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.

Authors:  Angelo Scuteri; Serena Sanna; Wei-Min Chen; Manuela Uda; Giuseppe Albai; James Strait; Samer Najjar; Ramaiah Nagaraja; Marco Orrú; Gianluca Usala; Mariano Dei; Sandra Lai; Andrea Maschio; Fabio Busonero; Antonella Mulas; Georg B Ehret; Ashley A Fink; Alan B Weder; Richard S Cooper; Pilar Galan; Aravinda Chakravarti; David Schlessinger; Antonio Cao; Edward Lakatta; Gonçalo R Abecasis
Journal:  PLoS Genet       Date:  2007-07       Impact factor: 5.917

10.  Seipin is required for converting nascent to mature lipid droplets.

Authors:  Huajin Wang; Michel Becuwe; Benjamin E Housden; Chandramohan Chitraju; Ashley J Porras; Morven M Graham; Xinran N Liu; Abdou Rachid Thiam; David B Savage; Anil K Agarwal; Abhimanyu Garg; Maria-Jesus Olarte; Qingqing Lin; Florian Fröhlich; Hans Kristian Hannibal-Bach; Srigokul Upadhyayula; Norbert Perrimon; Tomas Kirchhausen; Christer S Ejsing; Tobias C Walther; Robert V Farese
Journal:  Elife       Date:  2016-08-26       Impact factor: 8.140

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  2 in total

1.  Integrated Analysis of C16orf54 as a Potential Prognostic, Diagnostic, and Immune Marker across Pan-Cancer.

Authors:  Xinna Du; Wei Xia; Weiping Fan; Xuan Shen; Hongyan Wu; Hu Zhang
Journal:  Dis Markers       Date:  2022-09-09       Impact factor: 3.464

2.  Identification of two pathways mediating protein targeting from ER to lipid droplets.

Authors:  Jiunn Song; Arda Mizrak; Chia-Wei Lee; Marcelo Cicconet; Zon Weng Lai; Wei-Chun Tang; Chieh-Han Lu; Stephanie E Mohr; Robert V Farese; Tobias C Walther
Journal:  Nat Cell Biol       Date:  2022-09-01       Impact factor: 28.213

  2 in total

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