| Literature DB >> 35131932 |
Ninghai Gan1,2,3, Yan Han1,2,3, Weizhong Zeng1,2,3, Yan Wang1,2,3, Jing Xue1,2,3, Youxing Jiang4,2,3.
Abstract
Transient receptor potential mucolipin 1 (TRPML1) is a Ca2+-permeable, nonselective cation channel ubiquitously expressed in the endolysosomes of mammalian cells and its loss-of-function mutations are the direct cause of type IV mucolipidosis (MLIV), an autosomal recessive lysosomal storage disease. TRPML1 is a ligand-gated channel that can be activated by phosphatidylinositol 3,5-bisphosphate [PI(3,5)P2] as well as some synthetic small-molecule agonists. Recently, rapamycin has also been shown to directly bind and activate TRPML1. Interestingly, both PI(3,5)P2 and rapamycin have low efficacy in channel activation individually but together they work cooperatively and activate the channel with high potency. To reveal the structural basis underlying the synergistic activation of TRPML1 by PI(3,5)P2 and rapamycin, we determined the high-resolution cryoelectron microscopy (cryo-EM) structures of the mouse TRPML1 channel in various states, including apo closed, PI(3,5)P2-bound closed, and PI(3,5)P2/temsirolimus (a rapamycin analog)-bound open states. These structures, combined with electrophysiology, elucidate the molecular details of ligand binding and provide structural insight into how the TRPML1 channel integrates two distantly bound ligand stimuli and facilitates channel opening.Entities:
Keywords: PI(3,5)P2; TRPML1; lysosomal channel; rapamycin
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Year: 2022 PMID: 35131932 PMCID: PMC8851561 DOI: 10.1073/pnas.2120404119
Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN: 0027-8424 Impact factor: 11.205
Fig. 1.Electrophysiology of TRPML1 activation. (A) Sample traces of TRPML1 activation recorded using a patch clamp in inside-out configuration with various ligands introduced into the bath solution (cytosolic). All traces were obtained from the same patch. The same ligand concentration was used when applied individually or as a mixture. (B) Comparison of TRPML1 currents at −140 mV elicited by the individual or mixed ligands shown in A. Currents are normalized against the current elicited by the mixed ligands of ML-SA1 (5 µM) and PI(3,5)P2 (1 μM). Data points are mean ± SEM (n = 5 independent experiments). (C) Sample traces of TRPML1 activation recorded using a patch clamp in whole-cell configuration with 100 µM PI(3,5)P2 in the pipette (cytosolic). Tem was introduced into the bath solution (extracellular/luminal). The basal current was recorded right after membrane breakthrough. The PI(3,5)P2-activated current was recorded about 3 min after membrane breakthrough, allowing the lipid ligand to diffuse into the cell and yield a stable current. (D) Inhibition of ML-SA1 activation by Tem recorded using a patch clamp in whole-cell configuration in the absence of PI(3,5)P2. ML-SA1 and Tem were both introduced into the bath solution (extracellular/luminal).
Fig. 2.Structure of closed TRPML1 in apo and PI(3,5)P2-bound states. (A) Side view of a cartoon representation of the PI(3,5)P2-bound closed TRPML1 structure with the three major domains from the front subunit colored (blue for S1 to S4, green for the luminal linker domain, and magenta for the pore domain). (B) The closed ion-conduction pore of TRPML1 with only two diagonal subunits shown for clarity. The central ion pathway is marked with dotted mesh. Key gating and filter residues are shown as sticks. (Insets) Zoomed-in views of the filter and the cytosolic gate. (C) Structural comparison of a single subunit between apo (gray) and PI(3,5)P2-bound (colored) TRPML1. (D) Zoomed-in view of the PI(3,5)P2-binding site with key ligand-interacting residues shown. The red numbers mark the C3 and C5 positions of inositol. (E) H-bonding interaction between R403 and Y355 in the presence and absence of PI(3,5)P2.
Fig. 3.Structure of TRPML1 in the PI(3,5)P2/Tem-bound open state. (A) Structure of PI(3,5)P2/Tem-bound TRPML1 with the front subunit shown as a green cartoon and the rest shown in gray surface representation. (Inset) Zoomed-in view of the Tem-binding site between S5 (green) and S6 (gray) of the neighboring subunit. Side chains of ligand-interacting residues are shown as yellow sticks. (B) Structural comparison of the ion-conduction pore between the closed (magenta) and open (green) states. Arrows indicate the movements from the closed to open state. (C) Pore radius along the central axis in the open and closed states. (D) Structural comparison of the lower gate and the selectivity filter between the open and closed states.
Fig. 4.Conformational changes of TRPML1 between the PI(3,5)P2-bound closed and PI(3,5)P2/Tem-bound open states. (A) Structural comparison of TRPML1 between the PI(3,5)P2-bound closed (magenta) and PI(3,5)P2/Tem-bound open (green) states. (B) Conformational changes at the Tem-binding region. Arrows indicate the Tem-induced movements at S5 and S4 from the neighboring subunit (labeled as S4′). (C) Two subtle movements at the PI(3,5)P2-binding region. Arrows indicate the movements from the closed to open state. (D) Zoomed-in view of the R403/Y404-mediated bending movement of S4. (E) Zoomed-in view of R403/Y404-mediated interactions that are observed in the open state (Right) but absent in the closed state (Left). (F) Top view of the pore-opening movement induced by the outward movement of the S4 C terminus. (G) Top view of the counterclockwise rotation of the luminal linker domain from the closed to open state.