| Literature DB >> 35126809 |
Siyuan Ke1, Jiarui Li2, Lu Zhao1, Jiarun Yang3, Xueyan Zhao1, Wenxin Zhang1, Xiaohui Qiu1, Xiuxian Yang1, Jiawei Zhou1, Yuying Tong3, Xiongzhao Zhu4, Xuan Liu1, Yanjie Yang1, Zhengxue Qiao1, Tianyi Bu1.
Abstract
Based on the "oxidative stress hypothesis" of major depressive disorder (MDD), cells regulate their structure through the Wnt pathway. Little is known regarding the interactions of dishevelled 3 (DVL3) and glycogen synthase kinase 3 beta (GSK3β) polymorphisms with MDD. The aim of the current study was to verify the relationship between DVL3 and GSK3β genetic variants in a Chinese Han population and further to evaluate whether these interactions exhibit gender-specificity. A total of 1136 participants, consisting of 541 MDD patients and 595 healthy subjects, were recruited. Five single-nucleotide polymorphisms (SNPs) of DVL3/GSK3β were selected to assess their interaction by use of a generalized multifactor dimensionality reduction method. The genotype and haplotype frequencies of DVL3/GSK3β polymorphisms were significantly different between patients and controls for DVL3 rs1709642 (P < 0.01) and GSK3β rs334558, rs6438552, and rs2199503 (P < 0.01). In addition, our results also showed that there were significant interaction effects between DVL3 and GSK3β polymorphisms and the risk of developing MDD, particularly in women. The interaction between DVL3 (rs1709642) and GSK3β (rs334558, rs6438552) showed a cross-validation (CV) consistency of 10/10, a P value of 0.001, and a testing accuracy of 59.22%, which was considered as the best generalized multifactor dimensionality reduction (GMDR) model. This study reveals the interaction between DVL3 and GSK3β polymorphisms on MDD susceptibility in a female Chinese Han population. The effect of gender should be taken into account in future studies that seek to explore the genetic predisposition to MDD relative to the DVL3 and GSK3β genes.Entities:
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Year: 2022 PMID: 35126809 PMCID: PMC8816570 DOI: 10.1155/2022/2633127
Source DB: PubMed Journal: Oxid Med Cell Longev ISSN: 1942-0994 Impact factor: 6.543
Primers sequence for SNPs of DVL3 and GSK3β.
| Gene | SNP ID | Polymorphisms | Location | Primer sequence (5′→3′) | MAF |
|---|---|---|---|---|---|
|
| rs1709642 | C/T | Intron region | F: 5′-TATCGAGGGAGAAAAGACAGG-3′ | 0.4429 |
| rs1969253 | C/A | Intron region | F: 5′-GAAAGTGGGTCAGAGGAGGA-3′ | 0.4804 | |
|
| |||||
|
| rs334558 | G/A | 5′regulatory region | F: 5′-TCAGGAAGTGTCCGCGCTTTG-3′ | 0.4014 |
| rs6438552 | G/A | Intron region | F: 5′-TCTAAACCTTAAAGAACTTAG-3′ | 0.4065 | |
| rs2199503 | A/G | Intron region | F: 5′-GGCAGGTTGGAATTTCAGAAC-3′ | 0.2021 | |
Demographic characteristics of participants.
| Variables | Case ( | Control ( |
|
|
|---|---|---|---|---|
| Age (years) | 43.99 ± 12.92 | 42.91 ± 9.14 | -1.606 | 0.109 |
| Gender | 2.402 | 0.121 | ||
| Female | 370 (68.4) | 381 (64.0) | ||
| Male | 171 (31.6) | 214 (36.0) | ||
| Marital status | 1.438 | 0.487 | ||
| Single | 83 (15.3) | 77 (12.9) | ||
| Stable | 423 (78.2) | 481 (80.8) | ||
| Separated or widow | 35 (6.5) | 37 (6.3) |
The genotypic distributions of all selected DVL3 and GSK3β polymorphisms conformed to the Hardy–Weinberg equilibrium (P > 0.05).
Analysis on the association between DVL3/GSK3β SNPs and MDD risk.
| SNP | Sample | Genotype |
| Allele |
| OR (95% CI) | |||
|---|---|---|---|---|---|---|---|---|---|
|
| |||||||||
| rs1709642 | CC | CT | TT | C | T | ||||
| Case | 93 (17.2) | 311 (57.5) | 137 (25.3) |
| 497 (45.9) | 585 (54.1) |
| 1.36 (1.15-1.60) | |
| Control | 174 (29.2) | 289 (48.6) | 132 (22.2) | 637 (53.5) | 553 (46.5) | ||||
| rs1969253 | CC | CA | AA | C | A | ||||
| Case | 107 (19.8) | 301 (55.6) | 133 (24.6) |
| 515 (47.6) | 567 (52.4) | 0.105 | 1.21 (1.03-1.43) | |
| Control | 165 (27.7) | 294 (49.4) | 136 (22.9) | 624 (52.4) | 566 (47.6) | ||||
|
| |||||||||
| rs334558 | GG | GA | AA | G | A | ||||
| Case | 152 (28.1) | 281 (51.9) | 108 (20.0) |
| 585 (54.1) | 497 (45.9) |
| 1.41 (1.19-1.67) | |
| Control | 233 (39.2) | 277 (46.5) | 85 (14.3) | 743 (62.4) | 447 (37.6) | ||||
| rs6438552 | GG | GA | AA | G | A | ||||
| Case | 124 (22.9) | 290 (53.6) | 127 (23.5) |
| 538 (49.7) | 544 (50.3) |
| 1.45 (1.23-1.71) | |
| Control | 214 (36.0) | 273 (45.9) | 108 (18.1) | 701 (58.9) | 489 (41.1) | ||||
| rs2199503 | AA | AG | GG | A | G | ||||
| Case | 185 (34.2) | 261 (48.2) | 95 (17.6) |
| 631 (58.3) | 451 (41.7) |
| 1.36 (1.14-1.61) | |
| Control | 259 (43.5) | 261 (43.9) | 75 (12.6) | 779 (65.5) | 411 (34.5) | ||||
Significant results are provided in bold after Bonferroni correction.
Analysis on the association between DVL3/GSK3β SNPs and MDD risk on different genetic models.
| Gene | SNP | Dominant model | Recessive model | ||
|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||
|
| rs1709642 | 2.09 (1.56-2.81) |
| 1.19 (0.90-1.59) | 0.220 |
| rs1969253 | 1.61 (1.21-2.15) |
| 1.09 (0.82-1.45) | 0.541 | |
|
| |||||
|
| rs334558 | 1.72 (1.33-2.23) |
| 1.42 (1.03-1.95) | 0.175 |
| rs6438552 | 1.94 (1.48-2.55) |
| 1.36 (1.01-1.83) | 0.215 | |
| rs2199503 | 1.49 (1.16-1.91) |
| 1.47 (1.04-2.06) | 0.140 | |
Dominant: AA versus Aa + aa; recessive: AA + Aa versus aa (a is the minor allele). Significant results are provided in bold after Bonferroni correction. Adjustment for gender, age, smoking, and alcohol drinking.
The result of linkage disequilibrium analysis between GSK3β and DVL3 SNPs.
| SNP1-SNP2 | LOD |
|
|
|---|---|---|---|
| rs6438552-rs2199503 | 282.19 | 0.975 | 0.696 |
| rs6438552-rs334558 | 241.91 | 0.875 | 0.653 |
| rs2199503-rs334558 | 207.97 | 0.826 | 0.587 |
| rs1709642-rs1969253 | 417.28 | 0.966 | 0.925 |
Haplotype-based association analysis results.
| Haplotypes | SNP | Case ratios | Control ratios |
|
|
|---|---|---|---|---|---|
|
| rs1709642-rs1969253 | ||||
| H1 | C-C | 0.456 | 0.523 | 10.199 |
|
| H2 | T-A | 0.520 | 0.463 | 7.444 | 0.051 |
|
| |||||
|
| rs334558-rs6438552-rs2199503 | ||||
| H1 | G-G-A | 0.472 | 0.557 | 16.421 |
|
| H2 | A-A-G | 0.373 | 0.301 | 13.316 |
|
| H3 | A-A-A | 0.061 | 0.043 | 3.823 | 0.291 |
| H4 | G-A-G | 0.039 | 0.038 | 0.022 | 1.000 |
| H5 | G-A-A | 0.029 | 0.029 | 0.001 | 1.000 |
| H6 | A-G-A | 0.021 | 0.026 | 0.535 | 0.992 |
The gene-gene interaction models obtained by GMDR.
| Locus no. | Best model | Testing accuracy (%) | CV consistency |
|
|---|---|---|---|---|
| 2 |
| 52.43 | 7/10 | 0.377 |
|
|
|
|
|
|
| 4 |
| 54.36 | 10/10 | 0.011 |
| 5 |
| 53.47 | 10/10 | 0.011 |
For SNP: 0=no risk alleles; 1=1 risk allele; 2=2 risk alleles; adjustment for age, gender, smoking, and alcohol drinking; P value was yielded by the sign test; empirical P value was obtained using the permutation test (1000 replication).
Association between DVL3/GSK3β SNPs and MDD in different gender subgroups.
| SNP | Genotype/allele | Female | Male | ||||
|---|---|---|---|---|---|---|---|
| Case ( | Control ( |
| Case ( | Control ( |
| ||
|
| |||||||
| rs1969253 | CC | 75 (20.3) | 113 (29.7) | 0.050 | 32 (18.7) | 52 (24.3) | 0.405 |
| CA | 206 (55.7) | 181 (47.5) | 95 (55.6) | 113 (52.8) | |||
| AA | 89 (24.0) | 87 (22.8) | 44 (25.7) | 49 (22.9) | |||
| C | 356 (48.1) | 407 (53.4) | 0.200 | 159 (46.5) | 217 (50.7) | 0.246 | |
| A | 384 (51.9) | 355 (46.6) | 183 (53.5) | 211 (49.3) | |||
| rs1709642 | CC | 64 (17.3) | 119 (31.2) |
| 29 (17.0) | 55 (25.7) | 0.117 |
| CT | 214 (57.8) | 179 (47.0) | 97 (56.7) | 110 (51.4) | |||
| TT | 92 (24.9) | 83 (21.8) | 45 (26.3) | 49 (22.9) | |||
| C | 342 (46.2) | 417 (54.7) |
| 155 (45.3) | 220 (51.4) | 0.094 | |
| T | 398 (53.8) | 345 (45.3) | 187 (54.7) | 208 (48.6) | |||
|
| |||||||
| rs334558 | GG | 101 (27.3) | 151 (39.6) |
| 51 (29.8) | 82 (38.3) | 0.212 |
| GA | 190 (51.3) | 175 (45.9) | 91 (53.2) | 102 (47.7) | |||
| AA | 79 (21.4) | 55 (14.5) | 29 (17.0) | 30 (14.0) | |||
| G | 392 (53.0) | 477 (62.6) |
| 193 (56.4) | 266 (62.1) | 0.132 | |
| A | 348 (47.0) | 285 (37.4) | 149 (43.6) | 162 (37.9) | |||
| rs6438552 | GG | 83 (22.4) | 137 (36.0) |
| 41 (24.0) | 77 (36.0) | 0.155 |
| GA | 193 (52.2) | 176 (46.2) | 97 (56.7) | 97 (45.3) | |||
| AA | 94 (25.4) | 68 (17.8) | 33 (19.3) | 40 (18.7) | |||
| G | 359 (48.5) | 450 (59.1) |
| 179 (52.3) | 251 (58.6) | 0.080 | |
| A | 381 (51.5) | 312 (40.9) | 163 (47.7) | 177 (41.4) | |||
| rs2199503 | AA | 124 (33.5) | 165 (43.3) | 0.065 | 61 (35.7) | 94 (43.9) | 0.208 |
| AG | 176 (47.6) | 164 (43.1) | 85 (49.7) | 97 (45.4) | |||
| GG | 70 (18.9) | 52 (13.6) | 25 (14.6) | 23 (10.7) | |||
| A | 424 (57.3) | 494 (64.8) |
| 207 (60.5) | 285 (66.6) | 0.082 | |
| G | 316 (42.7) | 268 (35.2) | 135 (39.5) | 143 (33.4) | |||
Analysis of association between DVL3/GSK3β haplotype and MDD in different gender subgroups.
| Haplotype | Female |
|
| Male |
|
| ||
|---|---|---|---|---|---|---|---|---|
| Case | Control | Case | Control | |||||
|
| ||||||||
| C-C | 0.459 | 0.533 | 8.083 |
| 0.447 | 0.505 | 1.581 | 0.606 |
| T-A | 0.516 | 0.451 | 6.304 | 0.095 | 0.529 | 0.484 | 2.502 | 0.814 |
|
| ||||||||
| G-G-A | 0.459 | 0.557 | 14.599 |
| 0.501 | 0.557 | 2.385 | 0.619 |
| A-A-G | 0.385 | 0.301 | 11.655 |
| 0.349 | 0.301 | 1.995 | 0.729 |
| A-A-A | 0.059 | 0.039 | 3.056 | 0.563 | 0.065 | 0.048 | 0.983 | 0.946 |
| G-A-G | 0.039 | 0.043 | 0.189 | 1.000 | 0.040 | 0.028 | 0.780 | 0.966 |
Note: DVL3: rs1709642-rs1969253; GSK3β: rs334558-rs6438552-rs2199503.
The gene-gene interaction models obtained by GMDR after gender stratification.
| Samples | Locus no. | Best model | Testing accuracy (%) | CV consistency |
|
|---|---|---|---|---|---|
| Female | 2 |
| 59.19 | 10/10 | 0.011 |
|
|
|
|
|
| |
| 4 |
| 56.58 | 10/10 | 0.055 | |
| 5 |
| 55.42 | 10/10 | 0.055 | |
| Male | 2 |
| 51.17 | 5/10 | 0.377 |
| 3 |
| 58.04 | 10/10 | 0.055 | |
| 4 |
| 54.12 | 8/10 | 0.377 | |
| 5 |
| 54.27 | 10/10 | 0.377 |
For SNP: 0=no risk alleles; 1=one risk allele; 2=two risk alleles. Adjustment for age, smoking, and alcohol drinking. Empirical P value was obtained using the permutation test (1000 replication).