| Literature DB >> 35126107 |
Yue Lu1,2,3, Yao Qi4,5, Li Li1,2,3, Yuhong Yan1,2,3, Jianan Wei1,2,3, Danni Yao1,2,3, Jingjing Wu1,2,3, Hao Deng1,2,3, Jingwen Deng1,2,3, Shuyan Ye1,2,3, Haiming Chen1,2,3, Qubo Chen1,2,3, Hengjun Gao4,5, Ling Han1,2,3, Chuanjian Lu1,2,3.
Abstract
Psoriasis is chronic skin disease and an important health concern. Traditional Chinese Medicine (TCM) has shown great promise in the treatment of psoriasis. However, the correlation between TCM Syndromes and genomics of psoriasis has not been evaluated. Here, we analyzed gene expression profiling of monocytes from psoriasis vulgaris patients with different TCM syndrome types to reveal the molecular basis of different psoriasis syndromes. Of the 62 cases of psoriasis vulgaris recruited, 16, 23, and 23 cases were of blood-heat syndrome, blood stasis syndrome, and blood-dryness syndrome, respectively; 10 healthy controls were recruited as controls. Affymertix's Gene Chip ®clariom D gene chip was used to detect the gene expression profile of peripheral blood monocytes collected from recruited individuals. Compared with the healthy control group, 1570 genes were up-regulated and 977 genes were down-regulated in the psoriasis vulgaris patients group; 798 genes and 108 genes were up- and down-regulated in the blood-heat syndrome group respectively; 319 and 433 genes were up- and down-regulated in the blood-dryness syndrome group, respectively; and 502 and 179 genes were up-and down-regulated in the blood-stasis syndrome group. Our analyses indicated not only common differential genes and pathways between psoriasis syndrome groups and healthy controls, but also syndrome-specific genes and pathways. The results of this study link the three syndromes at the gene level and will be useful for clarifying the molecular basis of TCM syndromes of psoriasis. Clinical Trial Registration: (http://www.chictr.org.cn/showproj.aspx?proj=4390), identifier (ChiCTR-TRC-14005185).Entities:
Keywords: TCM syndrome type; gene chip; gene expression; peripheral blood monocytes; psoriasis vulgaris
Year: 2022 PMID: 35126107 PMCID: PMC8807547 DOI: 10.3389/fphar.2021.759741
Source DB: PubMed Journal: Front Pharmacol ISSN: 1663-9812 Impact factor: 5.810
Analysis of differentially expressed genes between groups.
| Sample size | Differential genes | Up-regulated genes | Down-regulated genes | |
|---|---|---|---|---|
| The psoriasis patients group vs. the healthy control group | 62 vs. 10 | 2547 | 1570 | 977 |
| The psoriasis blood heat syndrome group vs. the healthy control group | 16 vs. 10 | 906 | 798 | 108 |
| The psoriasis blood dryness syndrome group vs. the healthy control group | 23 vs. 10 | 752 | 319 | 433 |
| The psoriasis blood stasis syndrome group vs. the healthy control group | 23 vs. 10 | 681 | 502 | 179 |
FIGURE 1Volcanic map (left panel) and heat map (right) showed the distributions of genes in different syndromes.
FIGURE 2Principal component analysis of gene expression in different syndromes.
FIGURE 3Analysis of regulated differential genes and pathways between three syndromes of psoriasis and healthy control group. (A) Analysis of regulated differential pathways between the psoriasis blood heat syndrome group and the control group; (B) Analysis of differentially expressed genes between the psoriasis blood heat syndrome group and the control groups; (C) Analysis of regulated differential pathways between the psoriasis blood dryness group and the control group; (D) Analysis of differentially expressed genes between the psoriasis blood dryness group and the control groups; (E) Analysis of regulated differential pathways between the psoriasis blood stasis syndrome group and the control group; (F) Analysis of differentially expressed genes between the psoriasis blood stasis syndrome and the control groups; (G) Venn analysis of differentially expressed genes and pathways between three syndromes of psoriasis and healthy control group.
The common pathways and specific pathways in different syndromes.
| The common pathways between the three syndromes | Specific pathways in blood heat syndrome | Specific pathways in blood stasis syndrome |
|---|---|---|
| Olfactory transduction | Viral carcinogenesis | Ribosome biogenesis in eukaryotes |
| Ribosome | Proteasome | |
| Huntington disease | ||
| Cardiac muscle contraction | ||
| Alzheimer disease | ||
| Parkinson disease | ||
| Oxidative phosphorylation |
FIGURE 4The gene validation by qRT-PCR. (*p < 0.05, **p < 0.01, ***p < 0.001 in qRT-PCR verification when comparing data between different syndrome groups and healthy control group).