Literature DB >> 35124727

FungalTraits vs. FUNGuild: Comparison of Ecological Functional Assignments of Leaf- and Needle-Associated Fungi Across 12 Temperate Tree Species.

Benjawan Tanunchai1,2, Li Ji1,3, Simon Andreas Schroeter4, Sara Fareed Mohamed Wahdan1,5, Shakhawat Hossen1,6, Yoseph Delelegn1, François Buscot1,7, Ann-Sophie Lehnert4, Eliane Gomes Alves4, Ines Hilke4, Gerd Gleixner4, Ernst-Detlef Schulze4, Matthias Noll8,9, Witoon Purahong10.   

Abstract

Recently, a new annotation tool "FungalTraits" was created based on the previous FUNGuild and FunFun databases, which has attracted high attention in the scientific community. These databases were widely used to gain more information from fungal sequencing datasets by assigning fungal functional traits. More than 1500 publications so far employed FUNGuild and the aim of this study is to compare this successful database with the recent FungalTraits database. Quality and quantity of the assignment by FUNGuild and FungalTraits to a fungal internal transcribed spacer (ITS)-based amplicon sequencing dataset on amplicon sequence variants (ASVs) were addressed. Sequencing dataset was derived from leaves and needles of 12 temperate broadleaved and coniferous tree species. We found that FungalTraits assigned more functional traits than FUNGuild, and especially the coverage of saprotrophs, plant pathogens, and endophytes was higher while lichenized fungi revealed similar findings. Moreover, ASVs derived from leaves and needles of each tree species were better assigned to all available fungal traits as well as to saprotrophs by FungalTraits compared to FUNGuild in particular for broadleaved tree species. Assigned ASV richness as well as fungal functional community composition was higher and more diverse after analyses with FungalTraits compared to FUNGuild. Moreover, datasets of both databases showed similar effect of environmental factors for saprotrophs but for endophytes, unidentical patterns of significant corresponding factors were obtained. As a conclusion, FungalTraits is superior to FUNGuild in assigning a higher quantity and quality of ASVs as well as a higher frequency of significant correlations with environmental factors.
© 2022. The Author(s).

Entities:  

Keywords:  Amplicon sequence variants; Endophytes; Functional assignment; Fungal amplicon sequencing; ITS; Lichenized fungi; Plant pathogens; Saprotrophs

Year:  2022        PMID: 35124727     DOI: 10.1007/s00248-022-01973-2

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  24 in total

1.  New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities.

Authors:  Katarina Ihrmark; Inga T M Bödeker; Karelyn Cruz-Martinez; Hanna Friberg; Ariana Kubartova; Jessica Schenck; Ylva Strid; Jan Stenlid; Mikael Brandström-Durling; Karina E Clemmensen; Björn D Lindahl
Journal:  FEMS Microbiol Ecol       Date:  2012-07-27       Impact factor: 4.194

Review 2.  Revisiting the 'Gadgil effect': do interguild fungal interactions control carbon cycling in forest soils?

Authors:  Christopher W Fernandez; Peter G Kennedy
Journal:  New Phytol       Date:  2015-09-14       Impact factor: 10.151

3.  Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments.

Authors:  Patricia Luis; Geoffroy Saint-Genis; Laurent Vallon; Carine Bourgeois; Maxime Bruto; Cyril Marchand; Eric Record; Mylène Hugoni
Journal:  Environ Microbiol       Date:  2019-03-19       Impact factor: 5.491

Review 4.  Forest microbiome: diversity, complexity and dynamics.

Authors:  Petr Baldrian
Journal:  FEMS Microbiol Rev       Date:  2017-03-01       Impact factor: 16.408

5.  Network analysis reveals seasonal variation of co-occurrence correlations between Cyanobacteria and other bacterioplankton.

Authors:  Dayong Zhao; Feng Shen; Jin Zeng; Rui Huang; Zhongbo Yu; Qinglong L Wu
Journal:  Sci Total Environ       Date:  2016-09-03       Impact factor: 7.963

6.  Clearcutting alters decomposition processes and initiates complex restructuring of fungal communities in soil and tree roots.

Authors:  Petr Kohout; Markéta Charvátová; Martina Štursová; Tereza Mašínová; Michal Tomšovský; Petr Baldrian
Journal:  ISME J       Date:  2018-01-15       Impact factor: 10.302

7.  Fungal functional ecology: bringing a trait-based approach to plant-associated fungi.

Authors:  Amy E Zanne; Kessy Abarenkov; Michelle E Afkhami; Carlos A Aguilar-Trigueros; Scott Bates; Jennifer M Bhatnagar; Posy E Busby; Natalie Christian; William K Cornwell; Thomas W Crowther; Habacuc Flores-Moreno; Dimitrios Floudas; Romina Gazis; David Hibbett; Peter Kennedy; Daniel L Lindner; Daniel S Maynard; Amy M Milo; Rolf Henrik Nilsson; Jeff Powell; Mark Schildhauer; Jonathan Schilling; Kathleen K Treseder
Journal:  Biol Rev Camb Philos Soc       Date:  2019-11-25

8.  Active and total microbial communities in forest soil are largely different and highly stratified during decomposition.

Authors:  Petr Baldrian; Miroslav Kolařík; Martina Stursová; Jan Kopecký; Vendula Valášková; Tomáš Větrovský; Lucia Zifčáková; Jaroslav Snajdr; Jakub Rídl; Cestmír Vlček; Jana Voříšková
Journal:  ISME J       Date:  2011-07-21       Impact factor: 10.302

9.  Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests.

Authors:  Karina E Clemmensen; Roger D Finlay; Anders Dahlberg; Jan Stenlid; David A Wardle; Björn D Lindahl
Journal:  New Phytol       Date:  2014-12-11       Impact factor: 10.151

10.  Leaf litter mixtures alter microbial community development: mechanisms for non-additive effects in litter decomposition.

Authors:  Samantha K Chapman; Gregory S Newman; Stephen C Hart; Jennifer A Schweitzer; George W Koch
Journal:  PLoS One       Date:  2013-04-29       Impact factor: 3.240

View more
  3 in total

1.  Elevated O3 Exerts Stronger Effects than Elevated CO2 on the Functional Guilds of Fungi, but Collectively Increase the Structural Complexity of Fungi in a Paddy Soil.

Authors:  Jianqing Wang; Xiuzhen Shi; Yunyan Tan; Liyan Wang; Guoyou Zhang
Journal:  Microb Ecol       Date:  2022-10-18       Impact factor: 4.192

2.  Applying EDTA in Chelating Excess Metal Ions to Improve Downstream DNA Recovery from Mine Tailings for Long-Read Amplicon Sequencing of Acidophilic Fungi Communities.

Authors:  Rosina Nkuna; Grace N Ijoma; Tonderayi S Matambo
Journal:  J Fungi (Basel)       Date:  2022-04-20

3.  More than you can see: Unraveling the ecology and biodiversity of lichenized fungi associated with leaves and needles of 12 temperate tree species using high-throughput sequencing.

Authors:  Benjawan Tanunchai; Simon Andreas Schroeter; Li Ji; Sara Fareed Mohamed Wahdan; Shakhawat Hossen; Ann-Sophie Lehnert; Hagen Grünberg; Gerd Gleixner; François Buscot; Ernst-Detlef Schulze; Matthias Noll; Witoon Purahong
Journal:  Front Microbiol       Date:  2022-09-16       Impact factor: 6.064

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.