| Literature DB >> 35116323 |
Ping Huang1,2,3,4, Peijuan Zhou5, Yuqi Liang2, Jiahua Wu3, Guosong Wu6, Rui Xu3, Yan Dai3, Qianqian Guo3, Hai Lu1,2,3,4, Qianjun Chen3.
Abstract
BACKGROUND: Triple-negative breast cancer (TNBC) is the most aggressive among breast cancer subtypes with the worst prognosis. Ginger is widely used in pharmaceuticals and as food. Its anticancer properties are known, but the mechanism is still unclear. [10]-Gingerol is one of the main phenolic compounds isolated from ginger. Studying the biological effects of [10]-Gingerol is of great significance to understand the efficacy of ginger.Entities:
Keywords: Triple-negative breast cancer (TNBC); [10]-Gingerol; apoptosis; molecular docking; natural product; network pharmacology
Year: 2021 PMID: 35116323 PMCID: PMC8798581 DOI: 10.21037/tcr-21-1138
Source DB: PubMed Journal: Transl Cancer Res ISSN: 2218-676X Impact factor: 1.241
The main active component of Ginger
| Target name | Compound name | BC | CC | DG | OB, % | DL |
|---|---|---|---|---|---|---|
| MOL002459 | 10-gingerol | 0.029 | 0.398 | 20 | 19.14 | 0.28 |
| MOL000449 | Stigmasterol | 0.029 | 0.482 | 11 | 43.83 | 0.76 |
| MOL000358 | beta-sitosterol | 0.002 | 0.385 | 8 | 36.91 | 0.75 |
| MOL002467 | 6-gingerol | 0.002 | 0.376 | 5 | 35.64 | 0.16 |
| MOL003358 | Euxanthone | 0.009 | 0.418 | 5 | 92.98 | 0.16 |
BC, betweenness centrality; CC, closeness centrality; DG, degree; OB, oral bioavailability; DL: drug-likeness.
Figure 1Identification of the potential targets of Ginger-TNBC. (A) Identification of the potential targets in the TCGA cohort; (B) identification of the potential targets in the GEO cohort; (C) Venn diagram to identify TNBC expressed genes between TCGA, GEO and Ginger; (D) the PPI network of 108 potential targets of Ginger-TNBC. TNBC, triple-negative breast cancer; TCGA, The Cancer Genome Atlas; GEO, gene expression omnibus; PPI, protein-protein interactions.
Figure 2The Ginger component-therapeutic target network. (A) The PPI network of 48 potential targets; (B) the PPI network of core candidate targets. PPI, protein-protein interactions.
The topological parameters of core candidate targets
| Target name | Betweenness centrality | Closeness centrality | Degree |
|---|---|---|---|
| ESR1 | 0.370 | 0.526 | 74 |
| ADH1C | 0.234 | 0.473 | 45 |
| MAOB | 0.176 | 0.449 | 34 |
| ADRB2 | 0.070 | 0.425 | 31 |
| PPARG | 0.061 | 0.442 | 30 |
| NR3C1 | 0.072 | 0.457 | 30 |
| ADH1B | 0.082 | 0.451 | 29 |
| CCNA2 | 0.014 | 0.415 | 23 |
| PGR | 0.016 | 0.446 | 22 |
| IL6 | 0.055 | 0.458 | 20 |
| ADRB1 | 0.021 | 0.384 | 18 |
| JUN | 0.023 | 0.448 | 18 |
| CAT | 0.124 | 0.513 | 17 |
| MAOA | 0.039 | 0.454 | 16 |
| CHEK1 | 0.017 | 0.385 | 16 |
| ADRA2A | 0.023 | 0.389 | 15 |
| CCNB1 | 0.011 | 0.430 | 13 |
| CDK1 | 0.003 | 0.374 | 12 |
| AURKA | 0.006 | 0.404 | 11 |
| LPL | 0.007 | 0.402 | 10 |
| MAPK10 | 0.006 | 0.433 | 9 |
| LIPE | 0.004 | 0.366 | 9 |
| CDK5 | 0.001 | 0.355 | 9 |
| SHMT2 | 0.009 | 0.356 | 7 |
| ALDH1A1 | 0.033 | 0.453 | 7 |
| NR3C2 | 0.000 | 0.369 | 6 |
| GPI | 0.007 | 0.355 | 6 |
| FASN | 0.013 | 0.378 | 6 |
| PTGER3 | 0.006 | 0.374 | 4 |
Figure 3Functional enrichment analysis of 30 core targets. (A) KEGG analysis; (B) functional enrichment analysis including cellular component, molecular function, biological process. KEGG, Kyoto Encyclopedia of Genes and Genomes.
Figure 4Kaplan-Meier analysis of the association between hub genes and the OS times of patients with TNBC. OS, overall survival; TNBC, triple-negative breast cancer.
The affinity of 5 hub targets and [10]-Gingerol
| Ligands targets | Affinity (kcal/mol) | ||||
|---|---|---|---|---|---|
| ADRA2A (6k42) | ADRB2 (3ny8) | FASN (2cg5) | JUN (4hmy) | PGR (1a28) | |
| Reference ligands | |||||
| CZX | −7 | ||||
| JRZ | −7.9 | ||||
| COA | −6.3 | ||||
| GTP | −6.6 | ||||
| STR | −11 | ||||
| [10]-Gingerol | −7.1 | −8 | −7.8 | −6 | −7 |
Figure 5The visual annotation of [10]-Gingerol combined with ADRB2. TNBC, triple-negative breast cancer.
Figure 6Induction of apoptosis by [10]-Gingerol in MDA-MB-231 human TNBC cells and MCF-10A normal breast epithelial cells. (A) Flow cytometric analysis of MDA-MB-231 and MCF-10A cells incubated with [10]-Gingerol for 24 h; (B) statistical analysis of apoptosis in MDA-MB-231; (C) statistical analysis of apoptosis in MCF-10A; (D) Western blotting analysis of apoptosis-related proteins in MDAMB-231; (E) Statistical analysis of apoptosis-related proteins. *P<0.05, **P<0.01, ***P<0.001, significantly different from control cells.
Figure 7Cell viability at the indicated concentrations of [10]-Gingerol in MDA-MB-231 human TNBC cells and MCF-10A normal breast epithelial cells at 24 h was assessed by CCK-8 assay. (A) Determination of IC50 of [10]-Gingerol on MDA-MB-231 cells; (B) determination of IC50 of [10]-Gingerol on MCF-10A cells.