Literature DB >> 35113402

Contribution of Omics and Systems Biology to Plant Biotechnology.

Ronaldo J D Dalio1,2, Celso Gaspar Litholdo3, Gabriela Arena3, Diogo Magalhães3,4, Marcos A Machado3.   

Abstract

The development of modern genetic engineering approaches and high throughput technologies in biological research, besides the holistic view of systems biology, have triggered the progress of biotechnology to address plant productivity and stress adaptation. Indeed, plant biotechnology has the potential to overcome many problems we currently face that impair our agriculture, such as diseases and pests, environmental pressures, or climate change. The system biology field encompasses the identification of the general principles and patterns found in living systems, by studying the molecular diversity and integrate this knowledge in complex models of regulatory networks. The "omics," which comprises but not limited to genomic, transcriptomic, proteomic, epigenomic, and metabolomic studies in entire plants, allow a better understanding of plant system biology and further contribute to biotechnology development. In this chapter, we provided an overview on omic studies for the searching and identification of metabolites and proteins employed by microorganisms to develop biotechnological products. Moreover, we present an overview of the central aspects of small RNA as regulators of gene expression connecting system networks and the potential application into plant biotechnology.
© 2021. Springer Nature Switzerland AG.

Entities:  

Keywords:  Effectors; Omics; Plant biotechnology; Plant-microbe interaction; Small RNAs

Mesh:

Year:  2021        PMID: 35113402     DOI: 10.1007/978-3-030-80352-0_10

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  109 in total

1.  MicroRNA166 controls root and nodule development in Medicago truncatula.

Authors:  Adnane Boualem; Philippe Laporte; Mariana Jovanovic; Carole Laffont; Julie Plet; Jean-Philippe Combier; Andreas Niebel; Martin Crespi; Florian Frugier
Journal:  Plant J       Date:  2008-02-22       Impact factor: 6.417

Review 2.  The CRISPR/Cas9 system for plant genome editing and beyond.

Authors:  Luisa Bortesi; Rainer Fischer
Journal:  Biotechnol Adv       Date:  2014-12-20       Impact factor: 14.227

Review 3.  Classification and comparison of small RNAs from plants.

Authors:  Michael J Axtell
Journal:  Annu Rev Plant Biol       Date:  2013-01-16       Impact factor: 26.379

4.  Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system.

Authors:  Christopher Brooks; Vladimir Nekrasov; Zachary B Lippman; Joyce Van Eck
Journal:  Plant Physiol       Date:  2014-09-15       Impact factor: 8.340

5.  RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes.

Authors:  A F Bent; B N Kunkel; D Dahlbeck; K L Brown; R Schmidt; J Giraudat; J Leung; B J Staskawicz
Journal:  Science       Date:  1994-09-23       Impact factor: 47.728

6.  PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.

Authors:  Rajendra Bari; Bikram Datt Pant; Mark Stitt; Wolf-Rüdiger Scheible
Journal:  Plant Physiol       Date:  2006-05-05       Impact factor: 8.340

7.  Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family.

Authors:  Robert S Allen; Junyan Li; Melissa I Stahle; Aurélie Dubroué; Frank Gubler; Anthony A Millar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-04       Impact factor: 11.205

8.  Auxin production by plant associated bacteria: impact on endogenous IAA content and growth of Triticum aestivum L.

Authors:  B Ali; A N Sabri; K Ljung; S Hasnain
Journal:  Lett Appl Microbiol       Date:  2009-02-02       Impact factor: 2.858

9.  What is systems biology?

Authors:  Rainer Breitling
Journal:  Front Physiol       Date:  2010-05-21       Impact factor: 4.566

10.  Principles of microRNA-target recognition.

Authors:  Julius Brennecke; Alexander Stark; Robert B Russell; Stephen M Cohen
Journal:  PLoS Biol       Date:  2005-03       Impact factor: 8.029

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