Literature DB >> 35113398

Interactomes: Experimental and In Silico Approaches.

Luíza Lane de Barros Dantas1, Marcelo Mendes Brandão2.   

Abstract

Any part of the Central Dogma of Molecular Biology (DNA replication, transcription, and translation) is based on an intricate protein-protein interaction. On this chapter, we will navigate over the techniques that enable us to construct or fulfill the gaps on an interactome study, directly using assessment of the biochemical and/or molecular machinery that allow two proteins to interact with each other; or rely on computational biology techniques to gather information on PPI from public available databases and evaluate this interaction.
© 2021. Springer Nature Switzerland AG.

Entities:  

Keywords:  Bioinformatics; Databases; Interactome; Protein–Protein interactions; Proteome

Mesh:

Substances:

Year:  2021        PMID: 35113398     DOI: 10.1007/978-3-030-80352-0_6

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  41 in total

Review 1.  Plant protein interactomes.

Authors:  Pascal Braun; Sébastien Aubourg; Jelle Van Leene; Geert De Jaeger; Claire Lurin
Journal:  Annu Rev Plant Biol       Date:  2013-01-16       Impact factor: 26.379

2.  The variable C-terminus of 14-3-3 proteins mediates isoform-specific interaction with sucrose-phosphate synthase in the yeast two-hybrid system.

Authors:  Frederik Börnke
Journal:  J Plant Physiol       Date:  2005-02       Impact factor: 3.549

Review 3.  Interactions of ABA signaling core components (SlPYLs, SlPP2Cs, and SlSnRK2s) in tomato (Solanum lycopersicon).

Authors:  Pei Chen; Yu-Fei Sun; Wen-Bin Kai; Bin Liang; Yu-Shu Zhang; Xia-Wan Zhai; Li Jiang; Yang-Wei Du; Ping Leng
Journal:  J Plant Physiol       Date:  2016-08-27       Impact factor: 3.549

4.  Detection of protein-protein interactions in plants using bimolecular fluorescence complementation.

Authors:  Keren Bracha-Drori; Keren Shichrur; Aviva Katz; Moran Oliva; Ruthie Angelovici; Shaul Yalovsky; Nir Ohad
Journal:  Plant J       Date:  2004-11       Impact factor: 6.417

5.  Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.

Authors:  Sandeep Chapagain; Yong Chan Park; Ju Hee Kim; Cheol Seong Jang
Journal:  Planta       Date:  2017-12-28       Impact factor: 4.116

6.  OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.

Authors:  Feng Chen; Aaron J Mackey; Christian J Stoeckert; David S Roos
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

Review 7.  Yeast two-hybrid, a powerful tool for systems biology.

Authors:  Anna Brückner; Cécile Polge; Nicolas Lentze; Daniel Auerbach; Uwe Schlattner
Journal:  Int J Mol Sci       Date:  2009-06-18       Impact factor: 6.208

8.  AtPIN: Arabidopsis thaliana protein interaction network.

Authors:  Marcelo M Brandão; Luiza L Dantas; Marcio C Silva-Filho
Journal:  BMC Bioinformatics       Date:  2009-12-31       Impact factor: 3.169

9.  An experimentally derived confidence score for binary protein-protein interactions.

Authors:  Pascal Braun; Murat Tasan; Matija Dreze; Miriam Barrios-Rodiles; Irma Lemmens; Haiyuan Yu; Julie M Sahalie; Ryan R Murray; Luba Roncari; Anne-Sophie de Smet; Kavitha Venkatesan; Jean-François Rual; Jean Vandenhaute; Michael E Cusick; Tony Pawson; David E Hill; Jan Tavernier; Jeffrey L Wrana; Frederick P Roth; Marc Vidal
Journal:  Nat Methods       Date:  2008-12-07       Impact factor: 28.547

10.  Current Approaches Toward Quantitative Mapping of the Interactome.

Authors:  Alexander Buntru; Philipp Trepte; Konrad Klockmeier; Sigrid Schnoegl; Erich E Wanker
Journal:  Front Genet       Date:  2016-05-04       Impact factor: 4.599

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