Literature DB >> 35112413

Qatar genome: Insights on genomics from the Middle East.

Hamdi Mbarek1, Geethanjali Devadoss Gandhi2,3, Senthil Selvaraj3, Wadha Al-Muftah1,4, Radja Badji1, Yasser Al-Sarraj1,5, Chadi Saad1, Dima Darwish1, Muhammad Alvi1, Tasnim Fadl1, Heba Yasin1, Fatima Alkuwari1, Rozaimi Razali6, Waleed Aamer3, Fatemeh Abbaszadeh7, Ikhlak Ahmed8, Younes Mokrab3, Karsten Suhre5, Omar Albagha2,9, Khalid Fakhro3, Ramin Badii7, Said I Ismail1,2, Asma Althani1,10.   

Abstract

Despite recent biomedical breakthroughs and large genomic studies growing momentum, the Middle Eastern population, home to over 400 million people, is underrepresented in the human genome variation databases. Here we describe insights from Phase 1 of the Qatar Genome Program with whole genome sequenced 6047 individuals from Qatar. We identified more than 88 million variants of which 24 million are novel and 23 million are singletons. Consistent with the high consanguinity and founder effects in the region, we found that several rare deleterious variants were more common in the Qatari population while others seem to provide protection against diseases and have shaped the genetic architecture of adaptive phenotypes. These results highlight the value of our data as a resource to advance genetic studies in the Arab and neighboring Middle Eastern populations and will significantly boost the current efforts to improve our understanding of global patterns of human variations, human history, and genetic contributions to health and diseases in diverse populations.
© 2022 The Authors. Human Mutation published by Wiley Periodicals LLC.

Entities:  

Keywords:  Arab ancestry; Middle East; diversity; genetics; large-scale sequencing

Mesh:

Year:  2022        PMID: 35112413     DOI: 10.1002/humu.24336

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  7 in total

1.  A de novo start-loss in EFTUD2 associated with mandibulofacial dysostosis with microcephaly: case report.

Authors:  Muhammad Kohailan; Omayma Al-Saei; Sujitha Padmajeya; Waleed Aamer; Najwa Elbashir; Ammira Al-Shabeeb Akil; Abdul-Rauf Kamboh; Khalid Fakhro
Journal:  Cold Spring Harb Mol Case Stud       Date:  2022-06-22

2.  Ratios of Acetaminophen Metabolites Identify New Loci of Pharmacogenetic Relevance in a Genome-Wide Association Study.

Authors:  Gaurav Thareja; Anne M Evans; Spencer D Wood; Nisha Stephan; Shaza Zaghlool; Anna Halama; Gabi Kastenmüller; Aziz Belkadi; Omar M E Albagha; Karsten Suhre
Journal:  Metabolites       Date:  2022-05-30

3.  The Prevalence and Genetic Spectrum of Familial Hypercholesterolemia in Qatar Based on Whole Genome Sequencing of 14,000 Subjects.

Authors:  Ilhame Diboun; Yasser Al-Sarraj; Salman M Toor; Shaban Mohammed; Nadeem Qureshi; Moza S H Al Hail; Amin Jayyousi; Jassim Al Suwaidi; Omar M E Albagha
Journal:  Front Genet       Date:  2022-07-15       Impact factor: 4.772

4.  Analysis of incidental findings in Qatar genome participants reveals novel functional variants in LMNA and DSP.

Authors:  Amal Elfatih; Sahar I Da'as; Doua Abdelrahman; Hamdi Mbarek; Idris Mohammed; Waseem Hasan; Khalid A Fakhro; Xavier Estivill; Borbala Mifsud
Journal:  Hum Mol Genet       Date:  2022-08-23       Impact factor: 5.121

5.  Ancestry-related distribution of Runs of homozygosity and functional variants in Qatari population.

Authors:  Massimo Mezzavilla; Massimiliano Cocca; Pierpaolo Maisano Delser; Ramin Badii; Fatemeh Abbaszadeh; Khalid Abdul Hadi; Girotto Giorgia; Paolo Gasparini
Journal:  BMC Genom Data       Date:  2022-09-21

6.  Patterns and distribution of de novo mutations in multiplex Middle Eastern families.

Authors:  Muhammad Kohailan; Waleed Aamer; Najeeb Syed; Sujitha Padmajeya; Sura Hussein; Amira Sayed; Jyothi Janardhanan; Sasirekha Palaniswamy; Nady El Hajj; Ammira Al-Shabeeb Akil; Khalid A Fakhro
Journal:  J Hum Genet       Date:  2022-06-20       Impact factor: 3.755

7.  Functional Characterization of the MYO6 Variant p.E60Q in Non-Syndromic Hearing Loss Patients.

Authors:  Moza Alkowari; Meritxell Espino-Guarch; Sahar Daas; Doua Abdelrahman; Waseem Hasan; Navaneethakrishnan Krishnamoorthy; Abbirami Sathappan; Patrick Sheehan; Nicholas Van Panhuys; Xavier Estivill
Journal:  Int J Mol Sci       Date:  2022-03-21       Impact factor: 5.923

  7 in total

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