Literature DB >> 35107780

Backbone NMR resonance assignment of the intrinsically disordered UBact protein from Nitrospira nitrosa.

Steven M Bonn1, David Fushman2.   

Abstract

Ubiquitin signaling in eukaryotes is responsible for a variety of cellular outcomes, most notably proteasomal degradation. A recent bioinformatic study has revealed the existence of a new proteasomal operon in certain gram-negative bacteria phyla. This operon contains genes similar to those included in the prokaryotic ubiquitin-like protein (Pup) proteasomal operon, but do not themselves contain Pup. Instead, they encode for a protein termed UBact with 30% sequence similarity to Pup. Here, we report the near-complete NMR assignment of the backbone and partial assignment of the side chain chemical shifts of the UBact protein from Nitrospira nitrosa. The 1H-15N HSQC spectrum shows a narrow spread of proton NMR signals, characteristic of an intrinsically disordered protein. This chemical shift assignment will facilitate further NMR studies to explore the role of UBact in this new putative proteasomal operon.
© 2022. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Intrinsically disordered protein; Nitrospira nitrosa; Proteasome; UBact

Mesh:

Substances:

Year:  2022        PMID: 35107780      PMCID: PMC9081246          DOI: 10.1007/s12104-022-10070-x

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.731


  20 in total

Review 1.  Polyubiquitin chains: polymeric protein signals.

Authors:  Cecile M Pickart; David Fushman
Journal:  Curr Opin Chem Biol       Date:  2004-12       Impact factor: 8.822

2.  Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate.

Authors:  Markus Sutter; Fred F Damberger; Frank Imkamp; Frédéric H-T Allain; Eilika Weber-Ban
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

3.  Identification of UBact, a ubiquitin-like protein, along with other homologous components of a conjugation system and the proteasome in different gram-negative bacteria.

Authors:  Gilad Lehmann; Ronald G Udasin; Ido Livneh; Aaron Ciechanover
Journal:  Biochem Biophys Res Commun       Date:  2017-01-10       Impact factor: 3.575

Review 4.  The Pup-Proteasome System of Mycobacteria.

Authors:  Nadine J Bode; K Heran Darwin
Journal:  Microbiol Spectr       Date:  2014-10

Review 5.  Archaeal proteasomes and sampylation.

Authors:  Julie A Maupin-Furlow
Journal:  Subcell Biochem       Date:  2013

6.  High-molecular-mass multicatalytic proteinase complexes produced by the nitrogen-fixing actinomycete Frankia strain BR.

Authors:  P Benoist; A Müller; H G Diem; J Schwencke
Journal:  J Bacteriol       Date:  1992-03       Impact factor: 3.490

7.  Purification of two high molecular weight proteases from rabbit reticulocyte lysate.

Authors:  R Hough; G Pratt; M Rechsteiner
Journal:  J Biol Chem       Date:  1987-06-15       Impact factor: 5.157

8.  TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts.

Authors:  Yang Shen; Frank Delaglio; Gabriel Cornilescu; Ad Bax
Journal:  J Biomol NMR       Date:  2009-06-23       Impact factor: 2.835

9.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

10.  Prokaryotic ubiquitin-like protein remains intrinsically disordered when covalently attached to proteasomal target proteins.

Authors:  Jonas Barandun; Fred F Damberger; Cyrille L Delley; Juerg Laederach; Frédéric H T Allain; Eilika Weber-Ban
Journal:  BMC Struct Biol       Date:  2017-02-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.