Literature DB >> 35103964

Chromatin Immunoprecipitation Sequencing (ChIP-seq) Protocol for Small Amounts of Frozen Biobanked Cardiac Tissue.

Jiayi Pei1,2, Noortje A M van den Dungen3, Folkert W Asselbergs1,4,5, Michal Mokry1,3, Magdalena Harakalova6,7.   

Abstract

Chromatin immunoprecipitation and sequencing (ChIP-seq) is a well-established method to study the epigenetic profile at the genome-wide scale, including histone modifications and DNA-protein interactions. It provides valuable insights to better understand disease mechanisms. Here we present an optimized ChIP-seq protocol suitable for human cardiac tissues, especially the frozen biobanked small biopsy samples.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Antibody; Cardiac tissues; Chromatin immunoprecipitation; Enhancers; Promoters; Sequencing; Small biopsy

Mesh:

Substances:

Year:  2022        PMID: 35103964     DOI: 10.1007/978-1-0716-2140-0_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

Review 1.  Methods for ChIP-seq analysis: A practical workflow and advanced applications.

Authors:  Ryuichiro Nakato; Toyonori Sakata
Journal:  Methods       Date:  2020-03-30       Impact factor: 3.608

2.  Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease.

Authors:  Timothy J Cherry; Marty G Yang; David A Harmin; Peter Tao; Andrew E Timms; Miriam Bauwens; Rando Allikmets; Evan M Jones; Rui Chen; Elfride De Baere; Michael E Greenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-07       Impact factor: 11.205

3.  Prediction of single-cell gene expression for transcription factor analysis.

Authors:  Fatemeh Behjati Ardakani; Kathrin Kattler; Tobias Heinen; Florian Schmidt; David Feuerborn; Gilles Gasparoni; Konstantin Lepikhov; Patrick Nell; Jan Hengstler; Jörn Walter; Marcel H Schulz
Journal:  Gigascience       Date:  2020-10-30       Impact factor: 6.524

4.  Optimized ChIP-seq method facilitates transcription factor profiling in human tumors.

Authors:  Abhishek A Singh; Karianne Schuurman; Ekaterina Nevedomskaya; Suzan Stelloo; Simon Linder; Marjolein Droog; Yongsoo Kim; Joyce Sanders; Henk van der Poel; Andries M Bergman; Lodewyk Fa Wessels; Wilbert Zwart
Journal:  Life Sci Alliance       Date:  2018-12-28

5.  Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq.

Authors:  Michele Busby; Catherine Xue; Catherine Li; Yossi Farjoun; Elizabeth Gienger; Ido Yofe; Adrianne Gladden; Charles B Epstein; Evan M Cornett; Scott B Rothbart; Chad Nusbaum; Alon Goren
Journal:  Epigenetics Chromatin       Date:  2016-11-04       Impact factor: 4.954

6.  Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo.

Authors:  Ralf Gilsbach; Martin Schwaderer; Sebastian Preissl; Björn A Grüning; David Kranzhöfer; Pedro Schneider; Thomas G Nührenberg; Sonia Mulero-Navarro; Dieter Weichenhan; Christian Braun; Martina Dreßen; Adam R Jacobs; Harald Lahm; Torsten Doenst; Rolf Backofen; Markus Krane; Bruce D Gelb; Lutz Hein
Journal:  Nat Commun       Date:  2018-01-26       Impact factor: 14.919

  6 in total

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