Literature DB >> 35103962

Editing of DNA Methylation Patterns Using CRISPR-Based Tools.

Jim Smith1, Rakesh Banerjee1, Robert J Weeks2, Aniruddha Chatterjee3.   

Abstract

DNA methylation is an epigenetic modification with an established role in both normal cellular function and mammalian disease. Despite well-characterized associations between aberrant DNA methylation changes and gene expression, evidence for a causal relationship in this context has been difficult to obtain. Early techniques for interrogating the role of DNA methylation in the regulation of gene transcription lack specificity and, where more specific techniques such and ZNFs and TALEs have been developed, they are limited by their extensive cost and labor requirements. However, the recent advent of CRISPR-based technologies has revolutionized our potential for site-specific epigenomic editing. Here, we provide a detailed protocol for the design, construction, and utilization of a transient, CRISPR-based DNA methylation-editing system in mammalian cells.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  CRISPR; DNA; Editing; Methylation; Transfection; dCas9

Mesh:

Year:  2022        PMID: 35103962     DOI: 10.1007/978-1-0716-2140-0_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

Review 1.  Epigenetic drivers of tumourigenesis and cancer metastasis.

Authors:  Aniruddha Chatterjee; Euan J Rodger; Michael R Eccles
Journal:  Semin Cancer Biol       Date:  2017-08-12       Impact factor: 15.707

2.  TET repression and increased DNMT activity synergistically induce aberrant DNA methylation.

Authors:  Hideyuki Takeshima; Tohru Niwa; Satoshi Yamashita; Takeji Takamura-Enya; Naoko Iida; Mika Wakabayashi; Sohachi Nanjo; Masanobu Abe; Toshiro Sugiyama; Young-Joon Kim; Toshikazu Ushijima
Journal:  J Clin Invest       Date:  2020-10-01       Impact factor: 14.808

Review 3.  The emerging field of epigenetics in neurodegeneration and neuroprotection.

Authors:  Jee-Yeon Hwang; Kelly A Aromolaran; R Suzanne Zukin
Journal:  Nat Rev Neurosci       Date:  2017-05-18       Impact factor: 34.870

4.  Compendium of aberrant DNA methylation and histone modifications in cancer.

Authors:  Naoko Hattori; Toshikazu Ushijima
Journal:  Biochem Biophys Res Commun       Date:  2014-09-04       Impact factor: 3.575

5.  Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation.

Authors:  Aniruddha Chatterjee; Peter A Stockwell; Euan J Rodger; Elizabeth J Duncan; Matthew F Parry; Robert J Weeks; Ian M Morison
Journal:  Sci Rep       Date:  2015-11-27       Impact factor: 4.379

6.  Marked Global DNA Hypomethylation Is Associated with Constitutive PD-L1 Expression in Melanoma.

Authors:  Aniruddha Chatterjee; Euan J Rodger; Antonio Ahn; Peter A Stockwell; Matthew Parry; Jyoti Motwani; Stuart J Gallagher; Elena Shklovskaya; Jessamy Tiffen; Michael R Eccles; Peter Hersey
Journal:  iScience       Date:  2018-06-28
  6 in total

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