| Literature DB >> 35103054 |
Anju Yadav1, Rahul Saxena1, Aayush Kumar1, Tarandeep Singh Walia2, Atef Zaguia3, S M Mostafa Kamal4.
Abstract
Pulmonary fibrosis is a severe chronic lung disease that causes irreversible scarring in the tissues of the lungs, which results in the loss of lung capacity. The Forced Vital Capacity (FVC) of the patient is an interesting measure to investigate this disease to have the prognosis of the disease. This paper proposes a deep learning-based FVC-Net architecture to predict the progression of the disease from the patient's computed tomography (CT) scan and the patient's metadata. The input to the model combines the image score generated based on the degree of honeycombing for a patient identified based on segmented lung images and the metadata. This input is then fed to a 3-layer net to obtain the final output. The performance of the proposed FVC-Net model is compared with various contemporary state-of-the-art deep learning-based models, which are available on a cohort from the pulmonary fibrosis progression dataset. The model showcased significant improvement in the performance over other models for modified Laplace Log-Likelihood (-6.64). Finally, the paper concludes with some prospects to be explored in the proposed study.Entities:
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Year: 2022 PMID: 35103054 PMCID: PMC8799953 DOI: 10.1155/2022/2832400
Source DB: PubMed Journal: Comput Intell Neurosci
Figure 1Stack of CT scan.
Figure 2Proposed methodology of FVC-Net model for prediction of FVC in pulmonary fibrosis dataset.
Figure 3Windowing (ID00264637202270643353440).
Figure 4Resampling (ID00007637202177411956430) from 512 ∗ 512 to 334 ∗ 334.
Figure 5Lung segmentation.
Figure 6Edge detection. Patient ID ID00426637202313170790466 and its degree of honeycombing is 0.033362067.
Final metadata after adding degree of honeycombing.
| Patients | Initial FVC | Age | Sex | Smoking status | Image score |
|---|---|---|---|---|---|
| ID00419637202311204720264 | 2920.15 | 73 | Male | Ex-smoker | 0.0024935 |
| ID00422637202311677017371 | 1939.37 | 73 | Male | Ex-smoker | 0.015953544 |
| ID00423637202312137826377 | 2771.34 | 72 | Male | Ex-smoker | 0.120674989 |
| ID00426637202313170790466 | 3030.47 | 73 | Male | Never smoked | 0.033362067 |
Figure 7Proposed model: FVC-Net architecture.
Training and validation loss
| Training | Validation | ||||||
|---|---|---|---|---|---|---|---|
| Dropout | Learning rate | MSE | MAE | MAPE | MSE | MAE | MAPE |
| 0.7 | 0.01 | 151.127 | 7.4348 | 597.8169 | 58.9223 | 5.5655 | 369.3281 |
| 0.7 | 0.001 | 49.6714 | 5.0131 | 393.4241 | 48.0598 | 5.2879 | 146.3218 |
| 0.7 | 0.003 | 40.8036 | 4.6676 | 347.9123 | 45.57 | 5.1772 | 187.84 |
| 0.7 | 0.0005 | 55.1239 | 5.258 | 282.2506 | 42.2396 | 4.7951 | 244.6641 |
| 0.75 | 0.01 | 247.2195 | 9.4761 | 972.0759 | 43.9481 | 4.3682 | 198.3117 |
| 0.75 | 0.001 | 53.3548 | 5.0557 | 316.7048 | 56.1926 | 5.9527 | 212.3215 |
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| 0.75 | 0.0005 | 35.1473 | 4.294 | 406.3161 | 51.8677 | 5.4012 | 126.1631 |
Figure 8MSE-loss-100 epochs-D = 0.75.
Figure 9MAE-loss-100 epochs-D = 0.75.
Figure 10MAPE-loss-100 epochs-D = 0.75.
Results from different algorithms.
| Algorithm | Score |
|---|---|
| FVC-Net | −6.641 |
| EfficientNets with Quantile Regression | −6.8424 |
| EfficientNets | −6.8855 |
| Random forest | −7.3348 |
| Logistic regression | −13.0544 |
Figure 11Comparison of the predictions from FVC-Net and LR and RF.
Comparison of the predictions from FVC-Net, LR, and RF
| Patient ID: ID00419637202311204720264 | Patient ID: ID00426637202313170790466 | |||||||
|---|---|---|---|---|---|---|---|---|
| Model | Initial (FVC) | Time (weeks) | Predicted (FVC) | Slope | Initial FVC | Time (weeks) | Predicted (FVC) | Slope |
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| 2920 | 50 | 2756.4 | -3.271 | 3030 | 50 | 2816.67 | −4.267 |
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| 2920 | 50 | 2650 | −5.4 | 3030 | 50 | 2523.33 | −10.133 |
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| 2920 | 50 | 2855 | −1.3 | 3030 | 50 | 2667 | −7.26 |
Comparison of Laplace Log-Likelihood scores for the proposed FVC-Net and other models in literature.
| Comparison with different methods | Laplace Log-Likelihood |
|---|---|
| FVC-Net (proposed model) | −6.641 |
| Elastic Net Regression [ | −6.73 |
| Ridge Regression [ | −6.81 |
| Fibrosis Net [ | −6.8188 |
| Kaggle 1st place [cf. 20] | −6.8305 |
| Kaggle 2nd place [cf. 20] | −6.8311 |
| Kaggle 3rd Place [cf. 20] | −6.8336 |
| Multiple Quantile Regression [ | −6.92 |