Literature DB >> 35100428

Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters.

Silvia Ceschi1, Michele Berselli2, Marta Cozzaglio1, Mery Giantin3, Stefano Toppo4,2, Barbara Spolaore1,4, Claudia Sissi1,4.   

Abstract

G-quadruplex (G4) structures that can form at guanine-rich genomic sites, including telomeres and gene promoters, are actively involved in genome maintenance, replication, and transcription, through finely tuned interactions with protein networks. In the present study, we identified the intermediate filament protein Vimentin as a binder with nanomolar affinity for those G-rich sequences that give rise to at least two adjacent G4 units, named G4 repeats. This interaction is supported by the N-terminal domains of soluble Vimentin tetramers. The selectivity of Vimentin for G4 repeats versus individual G4s provides an unprecedented result. Based on GO enrichment analysis performed on genes having putative G4 repeats within their core promoters, we suggest that Vimentin recruitment at these sites may contribute to the regulation of gene expression during cell development and migration, possibly by reshaping the local higher-order genome topology, as already reported for lamin B.
© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2022        PMID: 35100428      PMCID: PMC8860586          DOI: 10.1093/nar/gkab1274

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  58 in total

1.  Identification of a distinct soluble subunit of an intermediate filament protein: tetrameric vimentin from living cells.

Authors:  P Soellner; R A Quinlan; W W Franke
Journal:  Proc Natl Acad Sci U S A       Date:  1985-12       Impact factor: 11.205

2.  Structure and stability of higher-order human telomeric quadruplexes.

Authors:  Luigi Petraccone; Charles Spink; John O Trent; Nichola C Garbett; Chongkham S Mekmaysy; Concetta Giancola; Jonathan B Chaires
Journal:  J Am Chem Soc       Date:  2011-12-01       Impact factor: 15.419

3.  Cerebellar defect and impaired motor coordination in mice lacking vimentin.

Authors:  E Colucci-Guyon; M Giménez Y Ribotta; T Maurice; C Babinet; A Privat
Journal:  Glia       Date:  1999-01       Impact factor: 7.452

4.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

5.  Assays for Posttranslational Modifications of Intermediate Filament Proteins.

Authors:  Natasha T Snider; M Bishr Omary
Journal:  Methods Enzymol       Date:  2015-11-06       Impact factor: 1.600

6.  Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis.

Authors:  D Sen; W Gilbert
Journal:  Nature       Date:  1988-07-28       Impact factor: 49.962

7.  Substrate stiffness regulates solubility of cellular vimentin.

Authors:  Maria E Murray; Melissa G Mendez; Paul A Janmey
Journal:  Mol Biol Cell       Date:  2013-10-30       Impact factor: 4.138

8.  The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances.

Authors:  Orsolya Symmons; Leslie Pan; Silvia Remeseiro; Tugce Aktas; Felix Klein; Wolfgang Huber; François Spitz
Journal:  Dev Cell       Date:  2016-11-17       Impact factor: 12.270

Review 9.  Coaching from the sidelines: the nuclear periphery in genome regulation.

Authors:  Abigail Buchwalter; Jeanae M Kaneshiro; Martin W Hetzer
Journal:  Nat Rev Genet       Date:  2019-01       Impact factor: 53.242

10.  Lamin B1 mapping reveals the existence of dynamic and functional euchromatin lamin B1 domains.

Authors:  Laura Pascual-Reguant; Enrique Blanco; Silvia Galan; François Le Dily; Yasmina Cuartero; Gemma Serra-Bardenys; Valerio Di Carlo; Ane Iturbide; Joan Pau Cebrià-Costa; Lara Nonell; Antonio García de Herreros; Luciano Di Croce; Marc A Marti-Renom; Sandra Peiró
Journal:  Nat Commun       Date:  2018-08-24       Impact factor: 14.919

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  2 in total

1.  G-quadruplexes formation within the promoter of TEAD4 oncogene and their interaction with Vimentin.

Authors:  Marta Cozzaglio; Silvia Ceschi; Elisabetta Groaz; Mattia Sturlese; Claudia Sissi
Journal:  Front Chem       Date:  2022-09-15       Impact factor: 5.545

2.  Polymorphic and Higher-Order G-Quadruplexes as Possible Transcription Regulators: Novel Perspectives for Future Anticancer Therapeutic Applications.

Authors:  Riccardo Rigo; Elisabetta Groaz; Claudia Sissi
Journal:  Pharmaceuticals (Basel)       Date:  2022-03-19
  2 in total

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