| Literature DB >> 35095939 |
Yamei Zhuang1,2, Sihui Chen2, Wenjun Lian1, Li Xu1, Dian Wang2,3, Congpeng Wang1,2, Jie Meng1,2, Xianfeng Tang2, Hua Xu2, Shumin Wang2, Lin Du2, Yang Zhang2, Gongke Zhou1,2,4, Guohua Chai1,2,4.
Abstract
Wood formation of trees is a complex and costly developmental process, whose regulatory network is involved in the protein-protein and protein-DNA interactions. To detect such interactions in wood development, we developed a high-throughput screening system with 517 Gal4-AD-wood-associated transcription factors (TFs) library from Populus alba × P. glandulosa cv "84K." This system can be used for screening the upstream regulators and interacting proteins of targets by mating-based yeast-one hybrid (Y1H) and yeast-two-hybrid (Y2H) method, respectively. Multiple regulatory modules of lignin biosynthesis were identified based on this Populus system. Five TFs interacted with the 500-bp promoter fragment of PHENYLALANINE AMMONIA-LYASE 2 (PAL2), the first rate-limiting enzyme gene in the lignin biosynthesis pathway, and 10 TFs interacted with PaMYB4/LTF1, a key regulator of lignin biosynthesis. Some of these interactions were further validated by EMSA and BiFC assays. The TF-PaPAL2 promoter interaction and TF-PaMYB4 interaction revealed a complex mechanism governing the regulation of lignin synthesis in wood cells. Our high-throughput Y1H/Y2H screening system may be an efficient tool for studying regulatory network of wood formation in tree species.Entities:
Keywords: Populus; Y1H; Y2H; lignin; transcription factors; wood
Year: 2022 PMID: 35095939 PMCID: PMC8795814 DOI: 10.3389/fpls.2021.715809
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
FIGURE 1The scheme of the construction of a wood-associated transcription factors (TFs) library. A total of 517 Wood-associated TFs (WTFs) were identified from 4287 Populus TFs of 58 gene families in two database (PlantTDB and Phytozome 12) using the stringent filtering criteria. All pGADT7-TFs were independently transformed into the yeast strain Y187 for throughout mating-based Y1H or Y2H screening.
FIGURE 2Identification of TFs that bind to the PaPAL2 promoter. (A,B) Y1H screening of the TFs library using 500-bp PaPAL2 promoter fragment as a bait. Yeast growth on the non-selective medium SD-Trp-Leu showed the mating efficiency. The candidate TFs can be detected on medium with 10 mM 3-AT. (C) Y1H assays verifying that PaMYB21, PaWRKY20, PaMYBH, or PaDF1 was able to bind to the PaPAL2 promoter fragment. Plasmids transformed into Y187 were screened on the SD/-Trp-Leu-His medium with 10 mM 3-AT. (D–F) EMSA results showing the specific bindings of PaWRKY20, PaMYBH, or PaDF1 protein to the PaPAL2 promoter in vitro. For competition assays, unlabeled probes (competitor) in 20-fold (+) molar excess relative to the labeled probe was include in the reaction.
Transcription factors that bind to the PaPAL2 promoter identified in the Populus wood-associated library using Y1H.
| No. | Loci | Name | Arabidopsis homolog | Gene family |
| 1 | Potri.009G053900.1 | MYB83 | MYB family | |
| 2 | Potri.002G068600.1 | DF1 | Trihelix family | |
| 3 | Potri.005G071900.1 | HB5 | HD-ZIP family | |
| 4 | Potri.001G189800.1 | MYBH | MYB-related family | |
| 5 | Potri.001G361600.1 | WRKY20 | WRKY family |
FIGURE 3Identification of TFs that interact with PaMYB4/LTF1. (A,B) Y2H screening of this TFs library by mating the bait PaMYB4/LTF1. Strong interaction can be detected on the stringent medium SD-Leu-Trp-His-Ade. (C) Y2H assays in yeast confirming the interaction between PaMYB4/LTF1 and PaMYB21, PaDF1, PaGRAS2, PaWRKY20, or PaANAC83 in vivo. Plasmids transformed into AH109 were screened on the SD/-Trp-Leu-His-Ade medium with or without 5 mM 3-AT.
Transcription factors that interact with PaMYB4/LTF1 identified in the Populus wood-associated library using Y2H.
| No. | Loci | Name | Arabidopsis homolog | Family |
| 1 | Potri.009G053900.1 | MYB83 | MYB family | |
| 2 | Potri.002G068600.1 | DF1 | Trihelix family | |
| 3 | Potri.001G113600.1 | Potri.001G113600 | AT3G58630 | Trihelix family |
| 4 | Potri.003G195300.1 | Potri.003G195300 | AT3G54390 | Trihelix family |
| 5 | Potri.007G132000.1 | SHR | GRAS family | |
| 6 | Potri.009G033300.1 | GRAS2 | GRAS family | |
| 7 | Potri.005G123800.1 | Potri.005G123800 | AT5G66770 | GRAS family |
| 8 | Potri.001G361600.1 | WRKY20 | WRKY family | |
| 9 | Potri.001G061200.1 | ANAC083 | NAC family | |
| 10 | Potri.002G002400.1 | Potri.002G002400 | AT1G76580 | SBP family |
FIGURE 4BiFC validation of the in vivo interaction between PaMYB21, PaDF1, or PaWRKY20 and PaMYB4/LTF1. (A–C) Pa MYB21-, Pa DF1-, or PaWRKY20-YFPCE and PaMYB4-YFPNE interact to form a functional YFP in the nucleus of Arabidopsis leaf protoplasts. The DNA fluorochrome 4′, 6-diamidino-2-phenylindole (DAPI) was used to stain the cell nucleus (blue). Bar = 10 μm.