Literature DB >> 35087923

An in vitro Coupled Assay for PEPC with Control of Bicarbonate Concentration.

Nicholas R Moody1, Chatawal Phansopal1, James D Reid1.   

Abstract

Phosphoenolpyruvate carboxylase (PEPC) catalyzes a critical step in carbon metabolism in plants and bacteria, the irreversible reaction between bicarbonate and phosphoenolpyruvate to produce the C4 compound oxaloacetate. This enzyme is particularly important in the context of C4 photosynthesis, where it is the initial carbon-fixing enzyme. Many studies have used kinetic approaches to characterize the properties of PEPCs from different species, different post-translational states, and after mutagenesis. Most of these studies have worked at a fixed saturating concentration of bicarbonate. Controlling the concentration of bicarbonate is difficult at low concentrations because of equilibration with atmospheric CO2. We describe here a simple, repeatable, and gas-tight assay system for PEPC that allows bicarbonate concentrations to be controlled above ca. 50 µM.
Copyright © 2021 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  C4; Bicarbonate assay; Gas-controlled assay; Malate dehydrogenase coupled assay; PEPC

Year:  2021        PMID: 35087923      PMCID: PMC8720526          DOI: 10.21769/BioProtoc.4264

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  10 in total

1.  Lateral Gene Transfer Acts As an Evolutionary Shortcut to Efficient C4 Biochemistry.

Authors:  Chatchawal Phansopa; Luke T Dunning; James D Reid; Pascal-Antoine Christin
Journal:  Mol Biol Evol       Date:  2020-11-01       Impact factor: 16.240

2.  Kinetic Modifications of C4 PEPC Are Qualitatively Convergent, but Larger in Panicum Than in Flaveria.

Authors:  Nicholas R Moody; Pascal-Antoine Christin; James D Reid
Journal:  Front Plant Sci       Date:  2020-07-03       Impact factor: 5.753

3.  Evolution of C(4) phosphoenolpyruvate carboxylase in Flaveria: determinants for high tolerance towards the inhibitor L-malate.

Authors:  Bianca Jacobs; Sascha Engelmann; Peter Westhoff; Udo Gowik
Journal:  Plant Cell Environ       Date:  2008-02-05       Impact factor: 7.228

4.  Evolution of C4 phosphoenolpyruvate carboxylase in Flaveria, a conserved serine residue in the carboxyl-terminal part of the enzyme is a major determinant for C4-specific characteristics.

Authors:  O E Bläsing; P Westhoff; P Svensson
Journal:  J Biol Chem       Date:  2000-09-08       Impact factor: 5.157

5.  A kinetic investigation of phosphoenolpyruvate carboxylase from Zea mays.

Authors:  J W Janc; M H O'Leary; W W Cleland
Journal:  Biochemistry       Date:  1992-07-21       Impact factor: 3.162

6.  An efficient method for the determination of K m values for HCO 3 (-) of phosphoenolpyruvate carboxylase.

Authors:  H Bauwe
Journal:  Planta       Date:  1986-11       Impact factor: 4.116

7.  A continuous spectrophotometric assay for inorganic phosphate and for measuring phosphate release kinetics in biological systems.

Authors:  M R Webb
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-01       Impact factor: 11.205

8.  Kinetic analysis of the non-phosphorylated, in vitro phosphorylated, and phosphorylation-site-mutant (Asp8) forms of intact recombinant C4 phosphoenolpyruvate carboxylase from sorghum.

Authors:  S M Duff; C S Andreo; V Pacquit; L Lepiniec; G Sarath; S A Condon; J Vidal; P Gadal; R Chollet
Journal:  Eur J Biochem       Date:  1995-02-15

9.  A single serine to alanine substitution decreases bicarbonate affinity of phosphoenolpyruvate carboxylase in C4Flaveria trinervia.

Authors:  Robert J DiMario; Asaph B Cousins
Journal:  J Exp Bot       Date:  2019-02-05       Impact factor: 6.992

10.  Greater efficiency of photosynthetic carbon fixation due to single amino-acid substitution.

Authors:  Judith Katharina Paulus; Daniel Schlieper; Georg Groth
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

  10 in total

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