| Literature DB >> 35087761 |
Bao Feng1,2, Liebin Huang1, Yu Liu2, Yehang Chen2, Haoyang Zhou2, Tianyou Yu3, Huimin Xue1, Qinxian Chen1, Tao Zhou1, Qionglian Kuang1, Zhiqi Yang4, Xiangguang Chen4, Xiaofeng Chen4, Zhenpeng Peng5, Wansheng Long1.
Abstract
OBJECTIVE: This study aims to differentiate preoperative Borrmann type IV gastric cancer (GC) from primary gastric lymphoma (PGL) by transfer learning radiomics nomogram (TLRN) with whole slide images of GC as source domain data.Entities:
Keywords: Borrmann type IV gastric cancer; deep learning; primary gastric lymphoma; transfer learning; whole slide image
Year: 2022 PMID: 35087761 PMCID: PMC8789309 DOI: 10.3389/fonc.2021.802205
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1The design flow chart of this paper. (A) Acquisition of ROI images for Borrmann type IV GC and PGL. (B) The ROI features extraction by Densenet121. (C) Transfer learning features selection process and model building, statistical analysis of clinical characteristics, and CT subjective findings. (D) Performance evaluation of the transfer learning radiomics nomogram. GC, gastric cancer; PGL, primary gastric lymphoma; ROI, region of interest.
Figure 2Illustration of the overall transfer learning framework of this study. The convolutional layer of the DenseNet121 model was taken out as the feature extractor of this study.
Figure 4The performance of the transfer learning radiomics nomogram and curve analysis for the various models. (A) The TLRN is based on TLRS and CT subjective findings. Calibration curves of the TLRN in the training cohort (B) and three validation cohorts (C). (D) Decision curve analysis for various models.
Diagnostic performance of the HCR, CM, TLRS, and TLRN in the training and validation sets.
| Model | AUC(95% CI) | Sensitive | Specificity | Accuracy | PPV | NPV | |
|---|---|---|---|---|---|---|---|
|
| CM | 0.894 | 0.850 | 0.800 | 0.836 | 0.919 | 0.667 |
| TLRS | 0.986 | 0.975 | 0.967 | 0.973 | 0.987 | 0.936 | |
| TLRN | 0.989 | 0.975 | 0.967 | 0.973 | 0.987 | 0.936 | |
|
| CM | 0.820 | 0.720 | 0.796 | 0.770 | 0.936 | 0.667 |
| TLRS | 0.904 | 0.980 | 0.720 | 0.892 | 0.872 | 0.947 | |
| TLRN | 0.958 | 0.857 | 0.960 | 0.891 | 0.976 | 0.774 | |
|
| CM | 0.816 | 0.827 | 0.687 | 0.772 | 0.805 | 0.717 |
| TLRS | 0.834 | 0.986 | 0.729 | 0.886 | 0.850 | 0.972 | |
| TLRN | 0.867 | 0.987 | 0.729 | 0.886 | 0.851 | 0.972 | |
|
| CM | 0.866 | 0.926 | 0.640 | 0.817 | 0.807 | 0.842 |
| TLRS | 0.894 (0.828–0.941) | 0.852 | 0.900 | 0.872 | 0.932 | 0.790 | |
| TLRN | 0.921 (0.860–0.961) | 0.926 | 0.820 | 0.886 | 0.893 | 0.872 |
AUC, area under curve; CI, confidence interval; CM, clinical model; TLRS, transfer learning radiomics signature; TLRN, transfer learning radiomics nomogram.
Figure 3The AUCs of three model. The clinical model, transfer learning radiomics signature based on the pathological image of gastric cancer (TLRS) and transfer learning radiomics nomogram (TLRN).
Figure 5Visualization of two patient samples for the three methods. (A) The TLRS-Gastric is based on the WSIs of GC. (B) The TLRS-ImageNet is based on the ImageNet dataset. (C) The TLRS-Lung is based on the WSIs of the lung. The positive and negative filters for the three methods are in the first row. In the second and third rows, the response heat map of the two patients’ negative and positive transfer learning features was noted. The red region represents a larger weight, which shows that the model focuses on the area of the CT image. GC, gastric cancer; PGL, primary gastric lymphoma; TLRS, transfer learning radiomics signature.
Clinical characteristics of PGL and Borrmann type IV GC patients in the training and internal validation cohorts.
| Characteristics | Training cohort ( | Internal validation cohort ( | ||||
|---|---|---|---|---|---|---|
| PGL ( | Borrmann type IV GC( |
| PGL ( | Borrmann type IV GC ( |
| |
|
| ||||||
| Male | 15 | 51 | 0.190 | 16 | 31 | 0.950 |
| Female | 15 | 29 | 9 | 18 | ||
|
| 56.97 ± 12.16 | 59.24 ± 13.04 | 0.409 | 56.40 ± 10.69 | 62.82 ± 10.88 | 0.018* |
|
| ||||||
| Present | 18 | 65 | 0.021* | 13 | 37 | 0.041* |
| Absent | 12 | 15 | 12 | 12 | ||
|
| ||||||
| Present | 4 | 62 | <0.001* | 1 | 30 | 0.001* |
| Absent | 26 | 18 | 24 | 19 | ||
|
| ||||||
| Present | 10 | 63 | <0.001* | 9 | 38 | <0.001* |
| Absent | 20 | 17 | 16 | 11 | ||
|
| ||||||
| Present | 8 | 61 | 0.001* | 9 | 34 | 0.006* |
| Absent | 22 | 19 | 16 | 15 | ||
|
| 1.425 (0.070 to 2.547) | −2.516(−4.183 to −1.821) | <0.001* | 0.068 (−1.038 to 1.840) | −2.657 (−3.982 to −1.233) | <0.001* |
Clinical characteristics of PGL and Borrmann type IV GC patients in the external validation cohorts 1 and 2.
| Characteristics | External validation cohort 1 (n = 123) | External validation cohort 2 (n = 131) | ||||
|---|---|---|---|---|---|---|
| PGL ( | Borrmann type IV GC ( |
| PGL ( | Borrmann type IV GC ( |
| |
|
| ||||||
| Male | 29 | 46 | 0.919 | 28 | 57 | 0.094 |
| Female | 19 | 29 | 22 | 24 | ||
|
| 63.05 ± 10.81 | 64.23 ± 12.12 | 0.370 | 55.25 ± 11.37 | 61.81 ± 10.33 | 0.531 |
|
| ||||||
| Present | 25 | 36 | 0.659 | 29 | 40 | 0.337 |
| Absent | 23 | 39 | 21 | 41 | ||
|
| ||||||
| Present | 7 | 26 | 0.014* | 45 | 55 | 0.004* |
| Absent | 41 | 49 | 5 | 26 | ||
|
| ||||||
| Present | 28 | 49 | 0.434 | 15 | 67 | <0.001* |
| Absent | 20 | 26 | 35 | 14 | ||
|
| ||||||
| Present | 20 | 55 | 0.083 | 21 | 60 | <0.001* |
| Absent | 28 | 20 | 29 | 21 | ||
|
| 0.017 (0.001 to 0.038) | −0.1754 (−0.998 to −0.053) | <0.001* | −0.371 (−0.999 to −0.0261) | −0.023 (−0.060 to −0.001) | <0.001* |
SD, standard deviation; PGL, primary gastric lymphoma; GC, gastric cancer; TL, transfer learning. *Statistically significant.