Literature DB >> 35083931

Keeping pace with CYP2D6 haplotype discovery: innovative methods to assign function.

Karen E Brown1,2, Jack W Staples1,2, Erica L Woodahl1,2.   

Abstract

The discovery of haplotypes with unknown or uncertain function in the CYP2D6 pharmacogene is outpacing the capabilities of traditional in vitro and in vivo approaches to characterize their function. This challenge will undoubtedly grow as pharmacogenomic research becomes more inclusive of globally diverse populations. As accurate phenotypic assignment is paramount to the utility of pharmacogenomics, high-throughput technologies are needed for this complex pharmacogene. We describe the evolving landscape of innovative approaches to assign function to CYP2D6 haplotypes and possibilities for adopting these technologies into cohesive processes. Promising approaches include ADME-optimized prediction frameworks, machine learning algorithms, deep mutational scanning and phenoconversion predictions. Implementing these approaches will lead to improved personalization of treatment for patients.

Entities:  

Keywords:  CYP2D6; drug metabolism; genotype; pharmacogenetics; pharmacogenomics; phenotype

Mesh:

Substances:

Year:  2022        PMID: 35083931      PMCID: PMC8890136          DOI: 10.2217/pgs-2021-0149

Source DB:  PubMed          Journal:  Pharmacogenomics        ISSN: 1462-2416            Impact factor:   2.533


  50 in total

1.  Practical interpretation of CYP2D6 haplotypes: Comparison and integration of automated and expert calling.

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Journal:  Clin Chim Acta       Date:  2016-02-18       Impact factor: 3.786

Review 2.  A review study: Computational techniques for expecting the impact of non-synonymous single nucleotide variants in human diseases.

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3.  Measuring Pharmacogene Variant Function at Scale Using Multiplexed Assays.

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4.  Massively parallel variant characterization identifies NUDT15 alleles associated with thiopurine toxicity.

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-24       Impact factor: 11.205

5.  Deep mutational scanning: a new style of protein science.

Authors:  Douglas M Fowler; Stanley Fields
Journal:  Nat Methods       Date:  2014-08       Impact factor: 28.547

Review 6.  Machine Learning SNP Based Prediction for Precision Medicine.

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Journal:  Front Genet       Date:  2019-03-27       Impact factor: 4.599

7.  Physiologically-Based Pharmacokinetic Modeling for the Prediction of CYP2D6-Mediated Gene-Drug-Drug Interactions.

Authors:  Flavia Storelli; Jules Desmeules; Youssef Daali
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2019-07-03

Review 8.  Technologies for Pharmacogenomics: A Review.

Authors:  Maaike van der Lee; Marjolein Kriek; Henk-Jan Guchelaar; Jesse J Swen
Journal:  Genes (Basel)       Date:  2020-12-04       Impact factor: 4.096

Review 9.  Clinical Pharmacogenetics Implementation Consortium Guideline for CYP2D6, OPRM1, and COMT Genotypes and Select Opioid Therapy.

Authors:  Kristine R Crews; Andrew A Monte; Rachel Huddart; Kelly E Caudle; Evan D Kharasch; Andrea Gaedigk; Henry M Dunnenberger; J Steven Leeder; John T Callaghan; Caroline Flora Samer; Teri E Klein; Cyrine E Haidar; Sara L Van Driest; Gualberto Ruano; Katrin Sangkuhl; Larisa H Cavallari; Daniel J Müller; Cynthia A Prows; Mohamed Nagy; Andrew A Somogyi; Todd C Skaar
Journal:  Clin Pharmacol Ther       Date:  2021-02-09       Impact factor: 6.903

10.  CYP2C9 and CYP2C19: Deep Mutational Scanning and Functional Characterization of Genomic Missense Variants.

Authors:  Lingxin Zhang; Vivekananda Sarangi; Irene Moon; Jia Yu; Duan Liu; Sandhya Devarajan; Joel M Reid; Krishna R Kalari; Liewei Wang; Richard Weinshilboum
Journal:  Clin Transl Sci       Date:  2020-03-10       Impact factor: 4.689

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