Literature DB >> 35083608

Tetra-primers ARMS-PCR Based Association Analyses of Synonymous and Intronic Variants in the ADAM12 Gene with Susceptibility to Knee Osteoarthritis: A Case-Control Study.

Sehrish Fatima1, Bushra Khan2, Obaid Yusuf Khan3, Maryam Amjad2, Sitwat Zehra2, Abid Azhar2.   

Abstract

Genetic variations in a disintegrin and metalloprotease 12 (ADAM12) gene may contribute to develop Osteoarthritis (OA) that is characterized by cartilage matrix degradation and osteophytes formation. Therefore, the aim of present study was to analyze the association between the ADAM12 gene variants and knee OA predisposition. Tetra-primers ARMS-PCR was employed, to genotype the ADAM12 gene polymorphisms (rs1044122 and rs1871054) in 400 knee OA patients and equal number of age-matched controls. The association between ADAM12 gene variants and OA susceptibility was estimated using the Chi-square, logistic regression, haplotypes and linkage analyses. A significant association of rs1044122 (genotype: χ2 = 18.94; P < 0.001, allele: χ2 = 19.10; P < 0.001) and rs1871054 (genotype: χ2 = 10.04; P = 0.007, allele: χ2 = 10.57; P = 0.001) was observed with increased OA susceptibility. The variant genotype of rs1044122 increased OA risk more than twice [odds ratio (OR) 2.20; P = 0.001] and the risk was higher in females (OR 2.43; P = 0.001). The variant genotype of rs1871054 was perceived to almost double the risk in females (OR 1.97; P = 0.003). Moreover, a significant association of rs1044122 and rs1871054 under the additive genetic model (P < 0.001 and P = 0.002, respectively) was observed. The targeted ADAM12 gene polymorphisms, showed significant association with knee OA susceptibility. Females harboring the polymorphisms might be at risk. Besides, the haplotype CC of rs1044122 and rs1871054 in the ADAM12 gene may double knee OA risk. These findings may help in determining the etiology of OA and recognizing the people at risk of developing knee OA.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  ADAM12; Haplotyping; Linkage disequilibrium; Osteoarthritis; Synonymous polymorphism; Tetra-primers ARMS-PCR

Mesh:

Substances:

Year:  2022        PMID: 35083608     DOI: 10.1007/s10528-022-10189-5

Source DB:  PubMed          Journal:  Biochem Genet        ISSN: 0006-2928            Impact factor:   2.220


  30 in total

1.  Haploview: analysis and visualization of LD and haplotype maps.

Authors:  J C Barrett; B Fry; J Maller; M J Daly
Journal:  Bioinformatics       Date:  2004-08-05       Impact factor: 6.937

2.  Association of ADAM 12 polymorphisms with the risk of knee osteoarthritis: meta-analysis of 5048 cases and 6848 controls.

Authors:  Xuerong Hu; Guoli Sun; Weidong Wang
Journal:  Rheumatol Int       Date:  2017-07-26       Impact factor: 2.631

3.  A synonymous single nucleotide polymorphism in DeltaF508 CFTR alters the secondary structure of the mRNA and the expression of the mutant protein.

Authors:  Rafal A Bartoszewski; Michael Jablonsky; Sylwia Bartoszewska; Lauren Stevenson; Qun Dai; John Kappes; James F Collawn; Zsuzsa Bebok
Journal:  J Biol Chem       Date:  2010-07-13       Impact factor: 5.157

4.  A novel, secreted form of human ADAM 12 (meltrin alpha) provokes myogenesis in vivo.

Authors:  B J Gilpin; F Loechel; M G Mattei; E Engvall; R Albrechtsen; U M Wewer
Journal:  J Biol Chem       Date:  1998-01-02       Impact factor: 5.157

5.  Basic statistical analysis in genetic case-control studies.

Authors:  Geraldine M Clarke; Carl A Anderson; Fredrik H Pettersson; Lon R Cardon; Andrew P Morris; Krina T Zondervan
Journal:  Nat Protoc       Date:  2011-02-03       Impact factor: 13.491

Review 6.  Osteoarthritis: A review.

Authors:  Susan Ashford; Julie Williard
Journal:  Nurse Pract       Date:  2014-05-12

7.  Genetic effects of rs3740199 polymorphism in ADAM12 gene on knee osteoarthritis: a meta-analysis.

Authors:  Zheng Hao; Xin Li; Jin Dai; Baocheng Zhao; Qing Jiang
Journal:  J Orthop Surg Res       Date:  2017-06-20       Impact factor: 2.359

8.  The incidence and characteristics of accelerated knee osteoarthritis among women: the Chingford cohort.

Authors:  Jeffrey B Driban; Raveendhara R Bannuru; Charles B Eaton; Tim D Spector; Deborah J Hart; Timothy E McAlindon; Bing Lu; Grace H Lo; Nigel K Arden
Journal:  BMC Musculoskelet Disord       Date:  2020-01-31       Impact factor: 2.362

Review 9.  Chapter 11: Genome-wide association studies.

Authors:  William S Bush; Jason H Moore
Journal:  PLoS Comput Biol       Date:  2012-12-27       Impact factor: 4.475

Review 10.  A Disintegrin and Metalloprotease (ADAM): Historical Overview of Their Functions.

Authors:  Nives Giebeler; Paola Zigrino
Journal:  Toxins (Basel)       Date:  2016-04-23       Impact factor: 4.546

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