Literature DB >> 35081684

Microarray expression profile and functional analysis of circular RNAs in choroidal neovascularization.

Jiancheng Huang1,2, Meng Chen2,3, Kai Xu2,3, Rongmei Zhou2,3, Shujie Zhang2,3, Chen Zhao1,2,3.   

Abstract

Choroidal neovascularization (CNV) is a leading cause of visual loss in age-related macular degeneration (AMD). However, the molecular mechanism for CNV progression is still unclear. This study aimed to identify CNV-related circular RNAs (circRNAs), a novel class of non-coding RNAs with diverse functions. A total of 117 circRNAs were differentially expressed in the murine CNV model by microarrays. Gene ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis were performed to identify the functions of selected circRNAs. The host genes of these circRNAs were predicted to be targeted to neurogenesis (ontology: biological process), proteinaceous extracellular matrix (ECM) (ontology: cellular component), and binding (ontology: molecular function). Differentially expressed circRNAs-mediated regulatory networks were enriched in ECM receptor interaction. Most of the dysregulated circRNAs could potentially bind to five different miRNAs by TargetScan and miRanda. Specifically, circ_15752 was identified in this circRNAs pool which may facilitate vascular endothelial cell proliferation, migration, and tube formation, suggesting a critical role in endothelial angiogenesis. Our work suggests that dysregulated circRNAs may be involved in CNV pathogenesis and serve as potential biomarkers for CNV.

Entities:  

Keywords:  choroidal neovascularization; circRNAs; microarray

Year:  2019        PMID: 35081684      PMCID: PMC7007725          DOI: 10.7555/JBR.33.20190063

Source DB:  PubMed          Journal:  J Biomed Res        ISSN: 1674-8301


  35 in total

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Authors:  Amy E Pasquinelli
Journal:  Nat Rev Genet       Date:  2012-03-13       Impact factor: 53.242

Review 2.  Circular RNA and miR-7 in cancer.

Authors:  Thomas B Hansen; Jørgen Kjems; Christian K Damgaard
Journal:  Cancer Res       Date:  2013-09-06       Impact factor: 12.701

Review 3.  The emerging role and clinical implication of human exonic circular RNA.

Authors:  Dongbin Lyu; Shenglin Huang
Journal:  RNA Biol       Date:  2016-09-02       Impact factor: 4.652

4.  CircRNA hsa_circ_0005105 upregulates NAMPT expression and promotes chondrocyte extracellular matrix degradation by sponging miR-26a.

Authors:  You Wu; Ying Zhang; Yu Zhang; Jia-Jia Wang
Journal:  Cell Biol Int       Date:  2017-04-11       Impact factor: 3.612

5.  Gene therapy with recombinant adeno-associated vectors for neovascular age-related macular degeneration: 1 year follow-up of a phase 1 randomised clinical trial.

Authors:  Elizabeth P Rakoczy; Chooi-May Lai; Aaron L Magno; Matthew E Wikstrom; Martyn A French; Cora M Pierce; Steven D Schwartz; Mark S Blumenkranz; Thomas W Chalberg; Mariapia A Degli-Esposti; Ian J Constable
Journal:  Lancet       Date:  2015-09-30       Impact factor: 79.321

6.  mTOR-mediated dedifferentiation of the retinal pigment epithelium initiates photoreceptor degeneration in mice.

Authors:  Chen Zhao; Douglas Yasumura; Xiyan Li; Michael Matthes; Marcia Lloyd; Gregory Nielsen; Kelly Ahern; Michael Snyder; Dean Bok; Joshua L Dunaief; Matthew M LaVail; Douglas Vollrath
Journal:  J Clin Invest       Date:  2010-12-06       Impact factor: 14.808

7.  Circular Noncoding RNA HIPK3 Mediates Retinal Vascular Dysfunction in Diabetes Mellitus.

Authors:  Kun Shan; Chang Liu; Bai-Hui Liu; Xue Chen; Rui Dong; Xin Liu; Yang-Yang Zhang; Ban Liu; Shu-Jie Zhang; Jia-Jian Wang; Sheng-Hai Zhang; Ji-Hong Wu; Chen Zhao; Biao Yan
Journal:  Circulation       Date:  2017-08-31       Impact factor: 29.690

8.  Intravitreal aflibercept injection for neovascular age-related macular degeneration: ninety-six-week results of the VIEW studies.

Authors:  Ursula Schmidt-Erfurth; Peter K Kaiser; Jean-François Korobelnik; David M Brown; Victor Chong; Quan Dong Nguyen; Allen C Ho; Yuichiro Ogura; Christian Simader; Glenn J Jaffe; Jason S Slakter; George D Yancopoulos; Neil Stahl; Robert Vitti; Alyson J Berliner; Yuhwen Soo; Majid Anderesi; Olaf Sowade; Oliver Zeitz; Christiane Norenberg; Rupert Sandbrink; Jeffrey S Heier
Journal:  Ophthalmology       Date:  2013-09-29       Impact factor: 12.079

9.  Laser-induced choroidal neovascularization model to study age-related macular degeneration in mice.

Authors:  Vincent Lambert; Julie Lecomte; Sylvain Hansen; Silvia Blacher; Maria-Luz Alvarez Gonzalez; Ingrid Struman; Nor Eddine Sounni; Eric Rozet; Pascal de Tullio; Jean Michel Foidart; Jean-Marie Rakic; Agnès Noel
Journal:  Nat Protoc       Date:  2013-10-17       Impact factor: 13.491

Review 10.  Decoding Noncoding RNAs: Role of MicroRNAs and Long Noncoding RNAs in Ocular Neovascularization.

Authors:  Yan Zhang; Siwei Cai; Yurong Jia; Chen Qi; Jing Sun; Hong Zhang; Fei Wang; Yunshan Cao; Xiaorong Li
Journal:  Theranostics       Date:  2017-07-22       Impact factor: 11.556

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  1 in total

1.  Potential biomarkers for retinopathy of prematurity identified by circular RNA profiling in peripheral blood mononuclear cells.

Authors:  Yun Li; Haixiang Zhou; Qian Huang; Wei Tan; Yuting Cai; Zicong Wang; Jingling Zou; Bingyan Li; Shigeo Yoshida; Yedi Zhou
Journal:  Front Immunol       Date:  2022-08-23       Impact factor: 8.786

  1 in total

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