Literature DB >> 3507691

Alignment of the amino acid sequences of distantly related proteins using variable gap penalties.

A M Lesk1, M Levitt, C Chothia.   

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Year:  1986        PMID： 3507691     DOI： 10.1093/protein/1.1.77

Source DB:  PubMed          Journal:  Protein Eng        ISSN： 0269-2139


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  20 in total

1.  The sequence determinants of cadherin molecules.

Authors:  A E Kister; M A Roytberg; C Chothia; J M Vasiliev; I M Gelfand
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

2.  An information theoretic approach to macromolecular modeling: I. Sequence alignments.

Authors:  Tiba Aynechi; Irwin D Kuntz
Journal:  Biophys J       Date:  2005-11       Impact factor: 4.033

3.  Dynamic behavior of an intrinsically unstructured linker domain is conserved in the face of negligible amino acid sequence conservation.

Authors:  Gary W Daughdrill; Pranesh Narayanaswami; Sara H Gilmore; Agniezka Belczyk; Celeste J Brown
Journal:  J Mol Evol       Date:  2007-08-25       Impact factor: 2.395

4.  A non-local gap-penalty for profile alignment.

Authors:  W R Taylor
Journal:  Bull Math Biol       Date:  1996-01       Impact factor: 1.758

5.  Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins.

Authors:  M Gerstein; M Levitt
Journal:  Protein Sci       Date:  1998-02       Impact factor: 6.725

6.  Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships.

Authors:  S E Brenner; C Chothia; T J Hubbard
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

7.  A flexible method to align large numbers of biological sequences.

Authors:  W R Taylor
Journal:  J Mol Evol       Date:  1988 Dec-1989 Feb       Impact factor: 2.395

8.  Alignment of 700 globin sequences: extent of amino acid substitution and its correlation with variation in volume.

Authors:  O H Kapp; L Moens; J Vanfleteren; C N Trotman; T Suzuki; S N Vinogradov
Journal:  Protein Sci       Date:  1995-10       Impact factor: 6.725

Review 9.  Catching a common fold.

Authors:  T L Blundell; M S Johnson
Journal:  Protein Sci       Date:  1993-06       Impact factor: 6.725

10.  Molecular model of the G protein alpha subunit based on the crystal structure of the HRAS protein.

Authors:  S R Holbrook; S H Kim
Journal:  Proc Natl Acad Sci U S A       Date:  1989-03       Impact factor: 11.205
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