Literature DB >> 35065578

Molecular mechanisms of cardiac actomyosin transforming from rigor state to post-rigor state.

Shengjie Sun1, Chitra Karki1, Bruce Z Gao2, Lin Li1.   

Abstract

Sudden cardiac death contributed to half of all deaths from cardiovascular diseases. The mechanism of the kinetic cycle of cardiac myosin is crucial for heart protection and drug development. The state change in the myosin kinetic cycle from the rigor state to the post-rigor state is fundamental to explain binding and dissociation. Here, we used β-cardiac myosin in the rigor and post-rigor states to model the actomyosin complexes. Molecular dynamics simulations, electrostatic analysis, and energetic analysis of actomyosin complexes were performed in this work. The results showed that there are fewer interactions and lower electrostatic binding strength in the post-rigor state than in the rigor state. In the post-rigor state, there were higher free binding energy, fewer salt bridges, and fewer hydrogen bonds. The results showed a lower binding affinity in the post-rigor state than in the rigor state. The decrease in the binding affinity provided important conditions for dissociation of the myosin from the actin filament. Although previous studies focused mostly on the binding process, this study provides evidence of dissociation, which is even more important in the myosin kinetic cycle. This research on the mechanism of myosin kinetic cycles provides a novel direction for future genetic disease studies.

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Year:  2022        PMID: 35065578      PMCID: PMC9305598          DOI: 10.1063/5.0078166

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   4.304


  36 in total

1.  All-atom molecular dynamics simulations of actin-myosin interactions: a comparative study of cardiac α myosin, β myosin, and fast skeletal muscle myosin.

Authors:  Minghui Li; Wenjun Zheng
Journal:  Biochemistry       Date:  2013-11-13       Impact factor: 3.162

2.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

3.  Cryo-EM structure of a human cytoplasmic actomyosin complex at near-atomic resolution.

Authors:  Julian von der Ecken; Sarah M Heissler; Salma Pathan-Chhatbar; Dietmar J Manstein; Stefan Raunser
Journal:  Nature       Date:  2016-06-20       Impact factor: 49.962

4.  Revealing the mechanism of SARS-CoV-2 spike protein binding with ACE2.

Authors:  Yixin Xie; Dan Du; Chitra B Karki; Wenhan Guo; Alan E Lopez-Hernandez; Shengjie Sun; Brenda Y Juarez; Haotian Li; Jun Wang; Lin Li
Journal:  Comput Sci Eng       Date:  2020-08-11       Impact factor: 2.080

Review 5.  How Myosin Generates Force on Actin Filaments.

Authors:  Anne Houdusse; H Lee Sweeney
Journal:  Trends Biochem Sci       Date:  2016-10-04       Impact factor: 13.807

6.  A common MYBPC3 (cardiac myosin binding protein C) variant associated with cardiomyopathies in South Asia.

Authors:  Perundurai S Dhandapany; Sakthivel Sadayappan; Yali Xue; Gareth T Powell; Deepa Selvi Rani; Prathiba Nallari; Taranjit Singh Rai; Madhu Khullar; Pedro Soares; Ajay Bahl; Jagan Mohan Tharkan; Pradeep Vaideeswar; Andiappan Rathinavel; Calambur Narasimhan; Dharma Rakshak Ayapati; Qasim Ayub; S Qasim Mehdi; Stephen Oppenheimer; Martin B Richards; Alkes L Price; Nick Patterson; David Reich; Lalji Singh; Chris Tyler-Smith; Kumarasamy Thangaraj
Journal:  Nat Genet       Date:  2009-01-18       Impact factor: 38.330

7.  Rigor-like structures from muscle myosins reveal key mechanical elements in the transduction pathways of this allosteric motor.

Authors:  Yuting Yang; S Gourinath; Mihály Kovács; László Nyitray; Robbie Reutzel; Daniel M Himmel; Elizabeth O'Neall-Hennessey; Ludmilla Reshetnikova; Andrew G Szent-Györgyi; Jerry H Brown; Carolyn Cohen
Journal:  Structure       Date:  2007-05       Impact factor: 5.006

8.  Hybrid method for representing ions in implicit solvation calculations.

Authors:  Shengjie Sun; Chitra Karki; Yixin Xie; Yuejiao Xian; Wenhan Guo; Bruce Z Gao; Lin Li
Journal:  Comput Struct Biotechnol J       Date:  2021-01-20       Impact factor: 7.271

9.  DelPhi: a comprehensive suite for DelPhi software and associated resources.

Authors:  Lin Li; Chuan Li; Subhra Sarkar; Jie Zhang; Shawn Witham; Zhe Zhang; Lin Wang; Nicholas Smith; Marharyta Petukh; Emil Alexov
Journal:  BMC Biophys       Date:  2012-05-14       Impact factor: 4.778

10.  Evaluating the Clinical Validity of Hypertrophic Cardiomyopathy Genes.

Authors:  Jodie Ingles; Jennifer Goldstein; Courtney Thaxton; Colleen Caleshu; Edward W Corty; Stephanie B Crowley; Kristen Dougherty; Steven M Harrison; Jennifer McGlaughon; Laura V Milko; Ana Morales; Bryce A Seifert; Natasha Strande; Kate Thomson; J Peter van Tintelen; Kathleen Wallace; Roddy Walsh; Quinn Wells; Nicola Whiffin; Leora Witkowski; Christopher Semsarian; James S Ware; Ray E Hershberger; Birgit Funke
Journal:  Circ Genom Precis Med       Date:  2019-02
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  1 in total

1.  HIT web server: A hybrid method to improve electrostatic calculations for biomolecules.

Authors:  Shengjie Sun; Juan A Lopez; Yixin Xie; Wenhan Guo; Dongfang Liu; Lin Li
Journal:  Comput Struct Biotechnol J       Date:  2022-03-24       Impact factor: 6.155

  1 in total

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