| Literature DB >> 35061108 |
Jacquelinne J Acuña1,2,3, Tay Ruiz-Gil4,5, Luis Marileo6, Elizabeth Carrazana4,7, Joaquin Rilling4,8, Marco Campos4,8, Francisco Correa-Araneda9, So Fujiyoshi8,10,11, Milko A Jorquera4,8,11.
Abstract
Temuco (Chile) is one of the most polluted cities in Chile and Latin America. Although the fine fraction of particulate matter (PM2.5) has been extensively studied and monitored due to its negative impact on public health, its microbiological components remain unknown. We explored, the airborne bacterial community in PM2.5 under good, moderate, alert, pre-emergency and emergency indices of air quality (AQIs) established by the Chilean government. Bacterial community relationship with environmental factors (PM2.5, PM10, carbon monoxide, among others), was also evaluated. Significant differences in PM2.5 bacterial community composition associated with AQIs were revealed, using 16S rRNA target sequences of denaturing gradient gel electrophoresis (DGGE) bands. Bacterial communities in PM2.5 were mainly clustered (80%) into emergency and pre-emergency samples. The dominant phylum was Proteobacteria and most abundant genus was Novosphingobium, traditionally related to opportunistic respiratory diseases. The main factors associated with community structure were PM2.5, PM10 and carbon monoxide concentrations. This study exposed that bacterial community composition in Temuco varies according to AQIs, with the occurrence of potential opportunistic bacteria on heavily polluted days.Entities:
Keywords: Air quality; Airborne bacteria; Bioaerosols; Chile; PM2.5; Particular matter
Mesh:
Substances:
Year: 2022 PMID: 35061108 PMCID: PMC8776980 DOI: 10.1007/s00203-021-02740-6
Source DB: PubMed Journal: Arch Microbiol ISSN: 0302-8933 Impact factor: 2.552
Environmental conditions in Temuco city during sampling days used in this study
| Sample code | Sampling date | Air quality | PM2.5a (µg/m3) | PM10a (µg/m3) | Carbon monoxidea (ppm) | Temperature mediab (ºC) | Wind speedb (m s−1) | Relative humidityb (%) | Precipitationb |
|---|---|---|---|---|---|---|---|---|---|
| GD_1 | 09-05-2018 | Good | 30 | 74 | 0.54 | 12.2 | 0.74 | 91 | 0 |
| GD_2 | 14-05-2018 | Good | 28 | 37 | 0.47 | 10.6 | 1.54 | 93 | 0.82 |
| GD_3 | 28-05-2018 | Good | 34 | 44 | 0.21 | 9.7 | 1.31 | 100 | 2.68 |
| MD_1 | 10-05-2018 | Moderate | 51 | 46 | 0.75 | 12.0 | 0.60 | 93 | 0 |
| MD_2 | 13-05-2018 | Moderate | 57 | 74 | 0.28 | 13.2 | 3.26 | 91 | 0.48 |
| MD_3 | 27-05-2018 | Moderate | 57 | 68 | 0.57 | 9.8 | 2.64 | 94 | 1.31 |
| AL_1 | 12-05-2018 | Alert | 93 | 117 | 1.07 | 9.9 | 0.88 | 98 | 0 |
| AL_2 | 16-05-2018 | Alert | 90 | 106 | 0.49 | 7.8 | 0.87 | 98 | 1.06 |
| AL_2 | 19-05-2018 | Alert | 90 | 107 | 0.64 | 7.1 | 0.63 | 90 | 0.01 |
| PE_1 | 21-05-2018 | PreEme | 155 | 166 | 1.85 | 4.8 | 1.16 | 92 | 0.02 |
| PE_2 | 25-05-2018 | PreEme | 121 | 145 | 0.67 | 7.5 | 1.21 | 90 | 0.02 |
| PE_3 | 31-05-2018 | PreEme | 116 | 125 | 1.54 | 4.0 | 1.00 | 90 | 0.02 |
| EM_1 | 22-05-2018 | Emergency | 183 | 204 | 2.48 | 2.6 | 0.61 | 100 | 0 |
| EM_2 | 23-05-2018 | Emergency | 241 | 273 | 2.53 | 3.9 | 0.40 | 95 | 0 |
| EM_3 | 24-05-2018 | Emergency | 182 | 217 | 1.44 | 6.3 | 0.68 | 95 | 0 |
aPM2.5 (particulate matter with an aerodynamic diameter of 2.5 μm or less), PM10 (particulate matter with an aerodynamic diameter of 10 μm or less), and carbon monoxide data were taken from http://airechile.mma.gob.cl
bTemperature, wind speed, relative humidity and precipitation data were taken from https://climatologia.meteochile.gob.cl
Spearman correlation coefficients between particulate matter and environmental conditions in Temuco city during sampling days used in this study
| PM2.5 | PM10 | CO | Temperature | Wind speed | Relative humidity | Precipitation | |
|---|---|---|---|---|---|---|---|
| PM2.5 | 1 | 0.966** | 0.846** | − 0.843** | − 0.444 | 0.288 | − 0.373 |
| PM10 | 1 | 0.835** | − 0.788** | 0.492 | − 0.196 | − 0.483 | |
| CO | 1 | − 0.754** | − 0.618* | 0.162 | − 0.552* | ||
| Temperature | 1 | 0.432 | − 0.225 | 0.063 | |||
| Wind speed | 1 | − 0.286 | − 0.694** | ||||
| Relative Humidity | 1 | − 0.128 | |||||
| Precipitation | 1 |
PM Particulate matter with an aerodynamic diameter of 2.5 μm or less, PM Particulate matter with an aerodynamic diameter of 10 μm or less, CO Carbon monoxide
*Denotes a correlation significant at the 0.05 level
**Denotes a correlation significant at the 0.01 level. 0.01
Fig. 1a Denaturing gradient gel electrophoresis (DGGE) banding profiles of bacterial communities associated with PM2.5 during diverse air quality conditions in Temuco city. Arrowheads and numbers indicate representative bands that were excised for DNA sequencing analysis. b Shannon diversity indices (H´) of bacterial communities generated by the PRIMERe v7 program (http://www.primer-e.com/). Air quality index Good: GD_1, GD_2, and GD_3; Moderate: MD_1, MD_2, and MD_3; Alarm: AL_1, AL_2, and AL_3; Pre-emergency: PE_1, PE_2, and PE_3; Emergency: EM_1, EM_2, and EM_3. The bars represent standard error, and the same letter denotes no significant difference (p ≤ 0.05, Tukey’s multiple range test)
Phylogenetic assignment of representative bands excised from denaturing gradient gel electrophoresis (DGGE)
| Origin/banda | Taxonomic groupb | Closest relatives or cloned sequences (accession no.)c | Similarity (%) | Accession no. |
|---|---|---|---|---|
Good (band no. 1) | Unclassified bacteria | Uncultured bacterium sp. from snow around Russian Antarctic stations (JX855459) | 95.1 | MW364621 |
Good (band no. 2) | Proteobacteria | Uncultured delta proteobacterium from Fe-rich Mats and Basaltic Rock (FJ497423) | 82.1 | MW364620 |
Moderate (band no. 3) | Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae | 81.2 | MW364619 | |
Moderate (band no. 4) | Unclassified bacteria | Uncultured bacterium sp. from subsurface aquifer sediment (JX855447) | 98.3 | MW364618 |
Moderate (band no. 5) | Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae | 84.2 | MW364617 | |
Alert (band no. 6) | Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae | 95.3 | MW364616 | |
Pre-emergency (band no. 7) | Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae | 92.1 | MW364615 | |
Pre-emergency (band no. 8) | Proteobacteria; Gammaproteobacteria; Enterobacterales;Enterobacteriaceae | 88.5 | MW364614 | |
Emergency (band no. 9) | Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae | 95.8 | MW364613 | |
Emergency (band no. 10) | Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae | 98.7 | MW364612 | |
Emergency (band no. 11) | Proteobacteria; Alphaproteobacteria | Uncultured alpha proteobacterium from natural Asphalt Lake (GU120589) | 98.7 | MW364611 |
Emergency (band no. 12) | Proteobacteria; Alphaproteobacteria; Sphingomonadales;Sphingomonadaceae | 95.6 | MW364610 | |
Emergency (band no. 13) | Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae | 86.2 | MW364609 | |
Emergency (band no. 14) | Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae | Uncultured | 96.7 | MW364608 |
Emergency (band no. 15) | Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | Uncultured | 87.3 | MW364607 |
Emergency (band no. 16) | Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; | 87.3 | MW364606 | |
Emergency (band no. 17) | Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae | 84.7 | MW364605 |
aCorresponding DGGE bands shown in Fig. 2a
bThe phylogenetic assignment is based on non-redundant GenBank database from NCBI (http://www.ncbi.nlm.nih.gov)
cBased on partial sequencing of 16S rRNA gene and comparison with those present in GenBank using Blastn and Megablast
Fig. 2a Dendrogram of DGGE profiles generated by Phoretix 1D Pro Gel Analysis Software (http://totallab.com/). b Nonmetric multidimensional scaling (NMDS) analysis of DGGE profiles generated by the PRIMERe v7 program (http://www.primer-e.com/). Air quality index Good: GD_1, GD_2, and GD_3; Moderate: MD_1, MD_2, and MD_3; Alarm: AL_1, AL_2, and AL_3; Pre-emergency: PE_1, PE_2, and PE_3; Emergency: EM_1, EM_2, and EM_3
Fig. 3Distance-based redundancy analysis (dbRDA) of variation in airborne bacterial community profiles as explained by environmental parameters generated by the PRIMERe v7 program (http://www.primer-e.com/). Vectors represent correlations of variables with community structures along the first two dbRDA axes. Dots represent bacterial community profiles present in PM2.5 during diverse air quality conditions. Arrows represent environmental parameters PM2.5, PM10, CO: carbon monoxide, T: temperature, W: wind speed, RH: relative humidity, P: precipitation. The values in parentheses indicate the percentages of the fitted and total variations explained by each axis. Air quality index Good: GD_1, GD_2 and GD_3; Moderate: MD_1, MD_2 and MD_3; Alarm: AL_1, AL_2 and AL_3; Pre-emergency: PE_1, PE_2, and PE_3; Emergency: EM_1, EM_2, and EM_3