Literature DB >> 35059036

Human disease biomarker panels through systems biology.

Bradley J Smith1, Licia C Silva-Costa1, Daniel Martins-de-Souza1,2,3.   

Abstract

As more uses for biomarkers are sought after for an increasing number of disease targets, single-target biomarkers are slowly giving way for biomarker panels. These panels incorporate various sources of biomolecular and clinical data to guarantee a higher robustness and power of separation for a clinical test. Multifactorial diseases such as psychiatric disorders show great potential for clinical use, assisting medical professionals during the analysis of risk and predisposition, disease diagnosis and prognosis, and treatment applicability and efficacy. More specific tests are also being developed to assist in ruling out, distinguishing between, and confirming suspicions of multifactorial diseases, as well as to predict which therapy option may be the best option for a given patient's biochemical profile. As more complex datasets are entering the field, involving multi-omic approaches, systems biology has stepped in to facilitate the discovery and validation steps during biomarker panel generation. Filtering biomolecules and clinical data, pre-validating and cross-validating potential biomarkers, generating final biomarker panels, and testing the robustness and applicability of those panels are all beginning to rely on machine learning and systems biology and research in this area will only benefit from advances in these approaches. © International Union for Pure and Applied Biophysics (IUPAB) and Springer-Verlag GmbH Germany, part of Springer Nature 2021.

Entities:  

Keywords:  Bioinformatics; Biomarker panels; Biomarkers; Post-translational modifications; Proteomics

Year:  2021        PMID: 35059036      PMCID: PMC8724340          DOI: 10.1007/s12551-021-00849-y

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  120 in total

1.  Assessing the statistical validity of proteomics based biomarkers.

Authors:  Suzanne Smit; Mariëlle J van Breemen; Huub C J Hoefsloot; Age K Smilde; Johannes M F G Aerts; Chris G de Koster
Journal:  Anal Chim Acta       Date:  2007-04-27       Impact factor: 6.558

2.  Posttranslational modifications in proteins: resources, tools and prediction methods.

Authors:  Shahin Ramazi; Javad Zahiri
Journal:  Database (Oxford)       Date:  2021-04-07       Impact factor: 3.451

Review 3.  Tubulin Posttranslational Modifications and Emerging Links to Human Disease.

Authors:  Maria M Magiera; Puja Singh; Sudarshan Gadadhar; Carsten Janke
Journal:  Cell       Date:  2018-05-31       Impact factor: 41.582

4.  CSF phosphorylated tau protein correlates with neocortical neurofibrillary pathology in Alzheimer's disease.

Authors:  Katharina Buerger; Michael Ewers; Tuula Pirttilä; Raymond Zinkowski; Irina Alafuzoff; Stefan J Teipel; John DeBernardis; Daniel Kerkman; Cheryl McCulloch; Hilkka Soininen; Harald Hampel
Journal:  Brain       Date:  2006-09-29       Impact factor: 13.501

Review 5.  The Role of Lipidomics in Autism Spectrum Disorder.

Authors:  Afaf El-Ansary; Salvatore Chirumbolo; Ramesa Shafi Bhat; Maryam Dadar; Eiman M Ibrahim; Geir Bjørklund
Journal:  Mol Diagn Ther       Date:  2020-02       Impact factor: 4.074

Review 6.  Biomarkers in Psychiatry: Concept, Definition, Types and Relevance to the Clinical Reality.

Authors:  Maria Salud García-Gutiérrez; Francisco Navarrete; Francisco Sala; Ani Gasparyan; Amaya Austrich-Olivares; Jorge Manzanares
Journal:  Front Psychiatry       Date:  2020-05-15       Impact factor: 4.157

Review 7.  Epigenetic biomarkers: potential applications in gastrointestinal cancers.

Authors:  Jiaqiu Li; Hongchuan Jin; Xian Wang
Journal:  ISRN Gastroenterol       Date:  2014-03-06

8.  Identification of the lipid biomarkers from plasma in idiopathic pulmonary fibrosis by Lipidomics.

Authors:  Feng Yan; Zhensong Wen; Rui Wang; Wenling Luo; Yufeng Du; Wenjun Wang; Xianyang Chen
Journal:  BMC Pulm Med       Date:  2017-12-06       Impact factor: 3.317

9.  A polygenic p factor for major psychiatric disorders.

Authors:  Saskia Selzam; Jonathan R I Coleman; Avshalom Caspi; Terrie E Moffitt; Robert Plomin
Journal:  Transl Psychiatry       Date:  2018-10-02       Impact factor: 6.222

Review 10.  Genomic insights into the overlap between psychiatric disorders: implications for research and clinical practice.

Authors:  Joanne L Doherty; Michael J Owen
Journal:  Genome Med       Date:  2014-04-28       Impact factor: 11.117

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