Literature DB >> 35059009

Overview of the Biomolecular Association and Dynamics session at the 20th IUPAB congress, 45th Brazilian congress of SBBF, and the 50th annual meeting of SBBq.

Paul Charles Whitford1.   

Abstract

In this session, experts in molecular biophysics described the dynamics of biopolymers across a wide range of length and time scales. This discussion highlighted numerous techniques that span from highly detailed simulations, to coarse-grained theoretical models, as well as high-resolution structural analysis. The topics were equally diverse, where there was discussion of biological processes at small (individual atoms), intermediate (assemblies) and very large scales (phase separation). © International Union for Pure and Applied Biophysics (IUPAB) and Springer-Verlag GmbH Germany, part of Springer Nature 2021.

Entities:  

Year:  2021        PMID: 35059009      PMCID: PMC8724368          DOI: 10.1007/s12551-021-00884-9

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  10 in total

1.  Crystal structure of the human Pax6 paired domain-DNA complex reveals specific roles for the linker region and carboxy-terminal subdomain in DNA binding.

Authors:  H E Xu; M A Rould; W Xu; J A Epstein; R L Maas; C O Pabo
Journal:  Genes Dev       Date:  1999-05-15       Impact factor: 11.361

2.  Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linker.

Authors:  Dana Vuzman; Michal Polonsky; Yaakov Levy
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

Review 3.  Studying ribosome dynamics with simplified models.

Authors:  Mariana Levi; Jeffrey K Noel; Paul C Whitford
Journal:  Methods       Date:  2019-03-30       Impact factor: 3.608

4.  Subcompartmentalization of polyampholyte species in organelle-like condensates is promoted by charge-pattern mismatch and strong excluded-volume interaction.

Authors:  Tanmoy Pal; Jonas Wessén; Suman Das; Hue Sun Chan
Journal:  Phys Rev E       Date:  2021-04       Impact factor: 2.529

5.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

6.  Quantifying the two-state facilitated diffusion model of protein-DNA interactions.

Authors:  Itai Leven; Yaakov Levy
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

7.  Ensemble cryo-EM elucidates the mechanism of translation fidelity.

Authors:  Anna B Loveland; Gabriel Demo; Nikolaus Grigorieff; Andrei A Korostelev
Journal:  Nature       Date:  2017-05-24       Impact factor: 49.962

8.  How accurate are accurate force-fields for B-DNA?

Authors:  Pablo D Dans; Ivan Ivani; Adam Hospital; Guillem Portella; Carlos González; Modesto Orozco
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

9.  Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading.

Authors:  Anna B Loveland; Gabriel Demo; Andrei A Korostelev
Journal:  Nature       Date:  2020-07-01       Impact factor: 49.962

10.  The static and dynamic structural heterogeneities of B-DNA: extending Calladine-Dickerson rules.

Authors:  Pablo D Dans; Alexandra Balaceanu; Marco Pasi; Alessandro S Patelli; Daiva Petkevičiūtė; Jürgen Walther; Adam Hospital; Genís Bayarri; Richard Lavery; John H Maddocks; Modesto Orozco
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

  10 in total

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