| Literature DB >> 35056808 |
Justyna Krupa1, Maria Wierzejewska1, Jan Lundell2.
Abstract
Weak complexes of isocyanic acid (HNCO) with nitrogen were studied computationally employing MP2, B2PLYPD3 and B3LYPD3 methods and experimentally by FTIR matrix isolation technique. The results show that HNCO interacts specifically with N2. For the 1:1 stoichiometry, three stable minima were located on the potential energy surface. The most stable of them involves a weak, almost linear hydrogen bond from the NH group of the acid molecule to nitrogen molecule lone pair. Two other structures are bound by van der Waals interactions of N⋯N and C⋯N types. The 1:2 and 2:1 HNCO complexes with nitrogen were computationally tracked as well. Similar types of interactions as in the 1:1 complexes were found in the case of the higher stoichiometry complexes. Analysis of the HNCO/N2/Ar spectra after deposition indicates that the 1:1 hydrogen-bonded complex is prevalent in argon matrices with a small amount of the van der Waals structures also present. Upon annealing, complexes of the 1:2 and 2:1 stoichiometry were detected as well.Entities:
Keywords: HNCO; atmospheric chemistry; computational chemistry; hydrogen bond; molecular complex; van der Waals interaction; vibrational spectroscopy
Year: 2022 PMID: 35056808 PMCID: PMC8777744 DOI: 10.3390/molecules27020495
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1The MP2 optimized structures of the 1:1 HNCO⋯N2 complexes. The positions of the bond (3,−1) critical points derived from AIM calculations are shown by small green circles.
Interatomic distances (Å), angles (degree) and electron density parameters of the intermolecular bond critical points (au) of the HNCO complexes with N2 (1:1) computed at the MP2/6-311++G(3df,3pd) level.
| Complex | Intermolecular Parameters 1 | AIM Parameters | ||||
|---|---|---|---|---|---|---|
| Interatomic Distances | Angle | BCP | ρ(r) | ∇2ρ(r) | ||
| H⋯Y | X⋯Y | X–H⋯Y | ||||
| ON1 | 4.372 | 6.258 | 170.7 | H1⋯N5 | 0.0106 | 0.0419 |
| ON2 | 6.187 | N2⋯N5 | 0.0048 | 0.0197 | ||
| ON3 | 5.992 | C3⋯N5 | 0.0051 | 0.0215 | ||
1 X: N or C; Y: N.
BSSE corrected interaction energies Eint, relative energies ΔE, relative Gibbs free energies ΔG (kJ mol−1), abundance at 298 K A (%) and entropic contributions at 298 K TΔS (kJ mol−1) of the HNCO⋯N2 complexes of the 1:1 stoichiometry calculated at MP2, B2PLYPD3 and B3LYPD3 levels with the 6-311++G(3df,3pd).
| Complex | MP2 | B2PLYPD3 | B3LYPD3 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Eint | ΔE | ΔG | A | TΔS 1 | Eint | ΔE | ΔG | A | TΔS | Eint | ΔE | ΔG | A | TΔS | |
| ON1 | −6.53 | 0.00 | 4.72 | 9 | −7.79 | −6.49 | 0.00 | 5.40 | 7 | −8.90 | −6.40 | 0.00 | 4.51 | 14 | −7.91 |
| ON2 | −3.10 | 3.40 | 0.00 | 61 | 0.00 | −2.59 | 3.86 | 0.00 | 63 | 0.00 | −2.68 | 3.72 | 0.00 | 86 | 0.00 |
| ON3 | −4.52 | 2.00 | 1.76 | 30 | −3.11 | −4.31 | 2.21 | 1.87 | 30 | −3.44 | |||||
1 The calculated vibrational contribution to entropy is equal to (MP2) 86.58, 92.82, 90.32, (B2PLYPD3) 86.20, 93.32, 90.57 and (B3LYPD3) 86.87, 93.21 cal mol−1 K−1 for ON1, ON2 and/or ON3, respectively.
Figure 2The MP2 optimized structures of the 1:2 HNCO complexes with N2. The positions of the bond (3,−1) and ring (3,+1) critical points derived from AIM calculations are shown by small green and red circles, respectively.
BSSE corrected interaction energies Eint and relative energies ΔE (kJ mol−1) of the HNCO⋯N2 complexes of the 1:2 stoichiometry calculated at MP2, B2PLYPD3 and B3LYPD3 levels with the 6-311++G(3df,3pd) basis set.
| Complex | MP2 | B2PLYPD3 | B3LYPD3 | |||
|---|---|---|---|---|---|---|
| Eint | ΔE | Eint | ΔE | Eint | ΔE | |
| O2N1 | −11.67 | 0.00 | −11.13 | 0.00 | −11.34 | 0.00 |
| O2N2 | −11.00 | 0.69 | −10.17 | 0.98 | −10.04 | 1.26 |
| O2N3 | −9.58 | 2.10 | −9.04 | 2.08 | −9.04 | 2.27 |
| O2N4 | −9.25 | 2.47 | ||||
Figure 3The MP2 optimized selected structures of the 2:1 HNCO complexes with N2. The positions of the bond (3,−1) and ring (3,+1) critical points derived from AIM calculations are shown by small green and red circles, respectively.
The BSSE corrected interaction energies Eint and relative energies ΔE (kJ mol−1) of the HNCO⋯N2 complexes of the 2:1 stoichiometry calculated at MP2, B2PLYPD3 and B3LYPD3 levels with the 6-311++G(3df,3pd) basis set.
| Complex | MP2 | B2PLYPD3 | B3LYPD3 | |||
|---|---|---|---|---|---|---|
| Eint | ΔE | Eint | ΔE | Eint | ΔE | |
| 2ON1 | −24.77 | 0.00 | −24.60 | 0.00 | −24.85 | 0.00 |
| 2ON2 | −23.81 | 1.09 | −23.97 | 0.71 | −24.81 | 0.19 |
| 2ON3 | −22.89 | 2.02 | −22.64 | 2.07 | −23.56 | 1.43 |
| 2ON4 | −22.13 | 2.62 | −22.72 | 1.86 | −24.31 | 0.63 |
| 2ON5 | −21.17 | 3.88 | −22.13 | 2.70 | −22.84 | 2.26 |
| 2ON6 | −20.38 | 4.31 | −20.67 | 3.83 | −21.80 | 2.96 |
| 2ON7 | −19.50 | 5.19 | −19.66 | 4.84 | −20.88 | 3.89 |
| 2ON8 | −18.37 | 6.32 | −18.70 | 5.79 | −20.84 | 3.97 |
| 2ON9 | −18.28 | 6.43 | −18.62 | 5.90 | −19.75 | 5.04 |
| 2ON10 | −16.48 | 8.18 | −17.03 | 7.44 | −18.74 | 6.06 |
Figure 4(A) The νNH, νasNCO and δNCO regions in the spectra of matrices: HNCO/Ar = 1/6000 (a), HNCO/N2/Ar = 1/2/5600 (b), HNCO/N2/Ar = 1/4/5600 (c); (B) the difference spectrum (d) obtained by subtracting the spectrum (a) from the spectrum (c) (pink trace). Letters M and D denote the HNCO monomer and dimer bands, respectively.
Selected wavenumber shifts (cm−1) calculated for the 1:1 complexes using the MP2, B2PLYPD3 and B3LYPD3 methods with the 6-311++G(3df,3pd) basis set compared to the experimental results. The calculated intensities (km mol−1) of the bands are given in parentheses.
| MP2 | B2PLYPD3 | B3LYPD3 | Mode | Exp.1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| ON1 | ON2 | ON3 | ON1 | ON2 | ON3 | ON1 | ON2 | ||
| −25 (405) | −6 | −9 | −25 | −5 | −8 | −23 | −4 | νNH | −17.5, −12.0 |
| +2 | −2 | −2 | +2 | −1 | −2 | +2 | 0 | νasNCO | +1.5, −1.0 |
| +21 | −3 | −6 | +22 | −3 | −4 | +20 | −3 | δNCO | +5.0, −5.5 |
1 The experimental shifts were calculated relative to the corresponding monomer band positions at 3511.5, 2259.0 and 573.5 cm−1, respectively.
Figure 5(A) The νNH, νasNCO and δNCO regions in the spectra of matrices: HNCO/N2/Ar = 1/4/5600 (a), and matrix (a) after 10 min at 33 K/10 K (b); (B) the difference spectrum (c) obtained by subtracting the spectrum (a) from the spectrum (b) (pink trace). Letters M and D denote the HNCO monomer and dimer bands, respectively.
Selected wavenumber shifts (cm−1) calculated for the 1:2 complexes using the MP2, B2PLYPD3 and B3LYPD3 methods with the 6-311++G(3df,3pd) basis set compared to the experimental results. The calculated intensities (km mol−1) of the bands are given in parentheses.
| MP2 | B2PLYPD3 | B3LYPD3 | Mode | Exp.1 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| O2N1 | O2N2 | O2N3 | O2N4 | O2N1 | O2N2 | O2N3 | O2N1 | O2N2 | O2N3 | ||
| −35 | −33 (398) | −31 (397) | −11 | −32 | −31 | −28 | −29 | −23 | −26 | νNH | −31.0 |
| 0 | 0 | 0 | −1 | 0 | 0 | 0 | 0 | 0 | +1 | νasNCO | |
| +16 | +22 | +19 | −6 | +17 | +21 | +19 | +16 | +16 | +17 | δNCO | +22.5 |
1 The experimental shifts were calculated relative to the corresponding monomer band positions at 3511.5, 2259.0 and 573.5 cm−1, respectively.
Selected wavenumber shifts (cm−1) calculated for selected 2:1 complexes using the MP2, B2PLYPD3 and B3LYPD3 methods with the 6−311++G(3df,3pd) basis set compared to the experimental results. The calculated intensities (km mol−1) of the bands are given in parentheses.
| MP2 | B2PLYPD3 | B3LYPD3 | Mode | Exp.1 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 2ON1 | 2ON2 | 2ON3 | 2ON1 | 2ON2 | 2ON3 | 2ON1 | 2ON2 | 2ON3 | ||
| −64 | −61 | −39 | −64 | −60 | −36 | −60 | −53 | −34 | νNH | −51.5, −54.5, −68.5, −76,5 |
| −145 | −150 (770) | −153 (784) | −154 (780) | −157 | −158 | −170 | −174 | −171 | −141.0, −154.5, −158.5 | |
| +5 | +5 | +5 | +7 | +6 | +7 | +9 | +8 | +9 | νasNCO | +9.0, +5.0 |
| −6 | −7 | −9 | −7 | −8 | −10 | −7 | −8 | −9 | −3.0, −7.0 | |
| +66 | +63 | +61 | +61 | +62 | +57 | +64 | +65 | +61 | δNCO | n.o. |
| +4 | +11 | −5 | +9 | +13 | −3 | +10 | +14 | −1 | +8.0, +2.5, −7.0 | |
1 The experimental shifts were calculated relative to the corresponding monomer band positions at 3511.5, 2259.0 and 573.5 cm−1, respectively.
The relative shifts observed for hydrogen bonded complexes of HA with nitrogen isolated in argon matrices.
| Proton | Relative Shifts (%) 1 | Reference | Proton Donor HA | Relative Shifts (%) | Reference |
|---|---|---|---|---|---|
| HF | 0.99 | [ | HNCO | 0.50 | This work |
| HNO3 | 0.97 | [ | HNCS | 0.46 | [ |
| CF3COOH | 0.91 | [ | HONO | 0.34 | [ |
| H2SO4 | 0.56 | [ | HCl | 0.27 | [ |
| HCOOH | 0.53 | [ | CH3OH | 0.19 | [ |
1 The relative shifts were calculated as ΔνAH/νAH⋯N2.