| Literature DB >> 35056044 |
Mariana Miranda1, Simon Nadel2.
Abstract
Sepsis remains an important source of morbidity and mortality in children, despite the development of standardized care. In the last decades, there has been an increased interest in genetic and genomic approaches to early recognition and development of treatments to manipulate the host inflammatory response. This review will present a summary of the normal host response to infection and progression to sepsis, followed by highlighting studies with a focus on gene association studies, epigenetics, and genome-wide expression profiling. The susceptibility (or outcome) of sepsis in children has been associated with several polymorphisms of genes broadly involved in inflammation, immunity, and coagulation. More recently, gene expression profiling has been focused on identifying novel biomarkers, pathways and therapeutic targets, and gene expression-based subclassification. Knowledge of a patient's individual genotype may, in the not-too-remote future, be used to guide tailored treatment for sepsis. However, at present, the impact of genomics remains far from the bedside of critically ill children.Entities:
Keywords: children; epigenetics; gene association studies; genome-wide expression profiling; host-pathogen response; immunity; inherited genetic variants; phenotypes; sepsis
Year: 2022 PMID: 35056044 PMCID: PMC8781648 DOI: 10.3390/pathogens11010096
Source DB: PubMed Journal: Pathogens ISSN: 2076-0817
Proinflammatory and anti-inflammatory mediators [10,11,12].
| Proinflammatory Mediators | Anti-Inflammatory Mediators |
|---|---|
| Like |
Summary of relevant genetic susceptibility associations studied published to date.
| Host Factor | Clinical Effect |
|---|---|
|
| |
|
| TNF2 allele and G308A mutation in TNF promoter associated with increased serum levels of TNFα, linked increased susceptibility to septic shock and illness severity in meningococcemia [ |
|
| TNFβ2 allele in bacteremia children associated with higher systemic levels of TNFα and higher mortality [ |
|
| IL-1B (−511) alleles associated with increased survival in meningococcemia. Combination of the IL-1B (−511) and IL-1RN (+2018) alleles associated with decreased survival. Further, IL1RA (+2018) polymorphism was associated with risk of meningococcal disease and worse outcome [ |
|
| G-174C and G-572C polymorphisms could be predictors of risk of development and/or predictors of sepsis severity, however conflicting findings in some studies [ |
|
| |
|
| Asp299Gly allele led to abnormal responses to endotoxin, with significant association with Gram-negative sepsis. TLR4 polymorphisms have been linked with susceptibility to malaria and meningococcal disease in children [ |
|
| Arg753Gln allele renders TLR2 less responsive to components of Gram-positive bacteria, although subsequent studies have not been able to confirm a strong association with severity of Gram-positive sepsis [ |
|
| Adapter proteins are the downstream signaling apparatus of TLRs. Polymorphisms in TIRAP have been linked to invasive pneumococcal disease and susceptibility to invasive |
|
| Polymorphisms associated with increased susceptibility to meningococcal disease, pneumonia and sepsis in neonates, severe infections, and increased risk of acute respiratory infections in children 6 to 17 months of age [ |
|
| |
|
| Polymorphisms associated with increased susceptibility to infections by encapsulated bacteria and illness severity, although conflicting findings in some studies [ |
|
| Polymorphisms associated with increased risk of Gram-negative sepsis [ |
|
| Polymorphisms associated with increased illness severity in infants with RSV infection [ |
|
| Polymorphisms associated with increased risk of invasive meningococcal disease, increased serum factor H levels, and reduced bactericidal activity against meningococcus [ |
|
| DD genotype associated with increased illness severity in meningococcal disease [ |
|
| Gene variants of the NOD2 receptor (pathogen recognition receptor) associated with increased risk of sepsis and illness severity [ |
|
| |
|
| 4G/4G haplotype polymorphism causes increased levels of PAI-1 (pro-coagulant factor as it inhibits fibrinolysis), associated with increased severity and mortality in meningococcal disease [ |
|
| Carriers of C-1654T and A-1641G allele present increased risk of developing meningococcal sepsis. Low plasma protein C levels have been correlated with increased severity of illness and poor outcome in meningococcal sepsis [ |
|
| Fibrinogen and fibrinogen degradation products are potent chemo-attractants and induce release of IL-8 from neutrophils. Carriage of the factor XIII-Val34Leu polymorphism was associated with a higher rate of sepsis among very low birth newborns of mixed European descent [ |
Summary of the more relevant miRNAs targets in pediatric sepsis published studies to date.
| miRNA Target | Clinical Effect |
|---|---|
|
| Pro-inflammatory factor involved in several signaling pathways that control inflammatory responses, such as modulating the differentiation of neutrophils and macrophages, negative regulation of STAT3, IL-6, IL-1β and TNFα production, by the TLR4/TLR2/NF-κB pathway during sepsis. Higher levels detected in severe sepsis [ |
|
| Critical role in the negative regulation of TLR/NF-κB mediated innate immune and inflammatory responses. Serum miR-146a levels were significantly decreased in pediatric septic patients. Serum miR-146a expression was negatively associated with protein c-reactive (PCR), pro-calcitonin (PCT), IL-6, and TNFα, which can reflect the severity [ |
|
| Shown to prevent NF-κB activation in sepsis. Upregulation of miR-125b correlated with disease severity, inflammation, and increased mortality in adult sepsis and positively correlated with other markers of sepsis, such as CRP, PCT, TNFα, and IL-6 levels [ |
|
| Reported to reduce inflammatory responses possibly by enhancing regulatory T-cell responses or by inhibiting NF-kB. Downregulation negatively correlated with IL-6 expression in neonatal sepsis [ |
|
| Negatively regulates the inflammatory responses induced by LPS, targeting matrix metalloproteinase 10 (MMP-10). Moreover, an essential contributor to the activation of cardiac fibrosis in late sepsis [ |
|
| miR-101 expression is influenced by virus infection and proinflammatory cytokines. Positively correlated with serum IL-6 and TNFα levels. Can be a negative regulator in macrophages via MAPK phosphatase-1 [ |
|
| NF-κB/DICER (a member of the ribonuclease (RNase) III family) signaling through the generation of mature forms of miR-130a can suppress TNFα expression [ |
Summary of relevant Gene expression profiling studies published to date.
| Factor | Clinical Effect |
|---|---|
|
| |
|
| Major contributor to myocardial depression in meningococcal sepsis [ |
|
| Early and persistent repression of gene programs directly related to/dependent on zinc homeostasis, as well as low serum zinc concentrations were reported in children with septic shock [ |
|
| Highest expressed gene in patients with septic shock and septic shock non-survivors, compared to survivors. Studies showed that pharmacologic inhibition or genetic ablation of MMP-8 grants a significant survival advantage in a murine model of sepsis [ |
|
| Triggering TREM-1 is critical for amplification of the inflammatory response to pathogen challenge. A recent study showed that TREM-1 pathway may not be particularly active in neonates with sepsis, illustrating how some candidate therapeutic strategies may not have a biological foundation across all age groups [ |
|
| |
|
| Multiple studies have applied gene expression profiling to differentiate bacterial versus viral infection in hospitalized febrile children, including expression signatures that can distinguish: influenza A from bacterial infection; |
|
| Differentially regulated gene between survivors and non-survivors in children with septic shock. A subsequent study demonstrated that a serum IL-8 level of 220 pg/mL or less, obtained within 24 h of admission, predicts a high likelihood of survival in children with septic shock [ |
|
| |
| Studies in pediatric cohorts reported pediatric septic shock subclasses, suggesting that rapid and dynamic shifts in transcription patterns, associated with various phases of sepsis, may account for some of the heterogeneity seen in sepsis [ | |