| Literature DB >> 35055347 |
Che-Cheng Chang1,2, Jiann-Horng Yeh3,4,5, Hou-Chang Chiu3,6, Yen-Ming Chen1, Mao-Jhen Jhou7, Tzu-Chi Liu8, Chi-Jie Lu7,9,10.
Abstract
Myasthenia gravis (MG), an acquired autoimmune-related neuromuscular disorder that causes muscle weakness, presents with varying severity, including myasthenic crisis (MC). Although MC can cause significant morbidity and mortality, specialized neuro-intensive care can produce a good long-term prognosis. Considering the outcomes of MG during hospitalization, it is critical to conduct risk assessments to predict the need for intensive care. Evidence and valid tools for the screening of critical patients with MG are lacking. We used three machine learning-based decision tree algorithms, including a classification and regression tree, C4.5, and C5.0, for predicting intensive care unit (ICU) admission of patients with MG. We included 228 MG patients admitted between 2015 and 2018. Among them, 88.2% were anti-acetylcholine receptors antibody positive and 4.7% were anti-muscle-specific kinase antibody positive. Twenty clinical variables were used as predictive variables. The C5.0 decision tree outperformed the other two decision tree and logistic regression models. The decision rules constructed by the best C5.0 model showed that the Myasthenia Gravis Foundation of America clinical classification at admission, thymoma history, azathioprine treatment history, disease duration, sex, and onset age were significant risk factors for the development of decision rules for ICU admission prediction. The developed machine learning-based decision tree can be a supportive tool for alerting clinicians regarding patients with MG who require intensive care, thereby improving the quality of care.Entities:
Keywords: decision tree; intensive care unit; machine learning; myasthenia gravis; predication
Year: 2022 PMID: 35055347 PMCID: PMC8778268 DOI: 10.3390/jpm12010032
Source DB: PubMed Journal: J Pers Med ISSN: 2075-4426
Figure 1Subject identification process.
Variable definitions.
| Variables | Description | Unit | |
|---|---|---|---|
| X1 | Age at admission | Age of first visit after 1 December 2015 | Years |
| X2 | Disease duration | Time from the onset to the first visit after 1 December 2015 | Months |
| X3 | Age at onset | Age of MG symptoms onset | Years |
| X4 | Gender | Male/Female | — |
| X5 | MGFA clinical classification | The maximum MGFA clinical severity during enrollment period: | — |
| X6 | Thymoma | Thymus present with thymoma | Yes/No |
| X7 | Hyperplasia | Thymus present with thymic hyperplasia | Yes/No |
| X8 | Thymectomy | History of received thymectomy | — |
| X9 | Anti-AChR Ab | Serology of autoantibody against Anti-AChR | Yes/No |
| X10 | Anti-MuSK Ab | Serology of autoantibody against Anti-MuSK Ab | Yes/No |
| X11 | dSN | Double seronegative | Yes/No |
| X12 | PSL Maximum daily dose | The maximum dose of corticosteroid from the first visit between December 2015 and October 2018 | mg |
| X13 | OI | Treatment with Oral Immunosuppressant during enrollment period | Yes/No |
| X14 | AZA | Treatment with Azathioprine during enrollment period | Yes/No |
| X15 | MMF | Treatment with Mycophenolate mofetil during enrollment period | Yes/No |
| X16 | OT | Treatment with Oral Tacrolimus during enrollment period | Yes/No |
| X17 | IVIG | Treatment with Intravenous immunoglobins during enrollment period | Yes/No |
| X18 | PP | Treatment with plasmapheresis during enrollment period | — |
| X19 | IC | Treatment with intravenous corticosteroid during enrollment period | Yes/No |
| X20 | RTX | Treatment with Rituximab during enrollment period | Yes/No |
| Y | ICU admission | ICU admission was defined as greater than 1 day | — |
Note: Anti-AChR Ab—anti-acetylcholine receptor; Anti-MuSK Ab—muscle-specific receptor tyrosine kinase; dSN—double-seronegative; PSL—prednisolone; OI—oral immunosuppressant; AZA—azathioprine; MMF—mycophenolate mofetil; IVIG—intravenous immunoglobins; PP—plasmapheresis; IC—intravenous corticosteroid; RTX—rituximab; OT—oral tacrolimus; ICU—intensive care unit.
Subject demographics.
| Characteristics | Metrics | |
|---|---|---|
| Basic Information: | Mean ± SD | |
| X1: | Age at admission | 49.14 ± 17.01 |
| X2: | Disease duration | 68.75 ± 84.40 |
| X3: | Age at onset | 43.22 ± 17.43 |
| X4: | Gender: | N (%) |
| Male | 88(38.60%) | |
| Female | 140(61.40%) | |
| X5: | MGFA clinical classification: | N (%) |
| Class I | 24(10.53%) | |
| Class II | 88(38.60%) | |
| Class III | 74(32.46%) | |
| Class IV | 26(11.40%) | |
| Class V | 16(7.02%) | |
| Thymus: | N (%) | |
| X6: | Thymoma: | |
| No | 118(51.75%) | |
| Yes | 110(48.25%) | |
| X7: | Hyperplasia: | |
| No | 161(70.61%) | |
| Yes | 67(29.39%) | |
| X8: | Thymectomy: | |
| No | 80(35.09%) | |
| Received thymectomy at presented | 93(40.79%) | |
| Received thymectomy before | 55(24.12%) | |
| Autoantibody: | N (%) | |
| X9: | Anti-AChR Ab: | |
| No | 27(11.84%) | |
| Yes | 201(88.16%) | |
| X10: | Anti-MuSK Ab: | |
| No | 217(95.18%) | |
| Yes | 11(4.82%) | |
| X11: | dSN: | |
| No | 211(92.54%) | |
| Yes | 17(7.46%) | |
| Treatment status: | Mean ± SD | |
| X12: | PSL Maximum daily dose | 14.60 ± 15.68 |
| X13: | OI: | N (%) |
| No | 91(39.91%) | |
| Yes | 137(60.09%) | |
| X14: | AZA: | N (%) |
| No | 152(66.67%) | |
| Yes | 76(33.33%) | |
| X15: | MMF: | N (%) |
| No | 219(96.05%) | |
| Yes | 9(3.95%) | |
| X16: | OT: | N (%) |
| No | 222(97.37%) | |
| Yes | 6(2.63%) | |
| X17: | IVIG: | N (%) |
| No | 213(93.42%) | |
| Yes | 15(6.58%) | |
| X18: | PP: | N (%) |
| No | 66(28.95%) | |
| 5 sessions | 131(57.46%) | |
| >5 sessions | 31(13.60%) | |
| X19: | IC: | N (%) |
| No | 185(81.14%) | |
| Yes | 43(18.86%) | |
| X20: | RTX: | N (%) |
| No | 222(97.37%) | |
| Yes | 6(2.63%) | |
| Y: | ICU admission: | N (%) |
| ≤1 day | 199(87.28%) | |
| >1 day | 29(12.72%) | |
Note: Anti-AChR Ab—anti-acetylcholine receptor; Anti-MuSK Ab—muscle-specific receptor tyrosine kinase; dSN—double-seronegative; PSL—prednisolone; OI—oral immunosuppressant; AZA—azathioprine; MMF—mycophenolate mofetil; IVIG—intravenous immunoglobins; PP—plasmapheresis; IC—intravenous corticosteroid; RTX—rituximab; OT—oral tacrolimus; ICU—intensive care unit.
Figure 2The overall flowchart of the proposed scheme.
Summary of the values of the hyperparameters for the best CART, C4.5, and C5.0 models.
| Methods | Hyperparameters | Value | Meaning |
|---|---|---|---|
| CART | minispilt | 20 | The minimum number of observations that must exist in a node for a split to be attempted. |
| minibucket | 20 | The minimum number of observations in any terminal node. | |
| maxdepth | 10 | The maximum depth of any node of the final tree. | |
| xval | 10 | Number of cross-validations. | |
| cp | 0.0781 | Complexity parameter: The minimum improvement in the model needed at each node. | |
| C4.5 | C | 0.5 | The confidence threshold tree size of pruning. |
| M | 3 | The minimum number of instances per leaf. | |
| C5.0 | trials | 20 | The number of boosting iterations. |
| model | Tree | The model growing of type. | |
| winnow | F | The tree be decomposed into a rule-based model. |
CART—classification and regression tree; C4.5—C4.5 decision tree; C5.0—C5.0 decision tree; cp—complexity parameter.
Figure 3Confusion matrix of each method based on its best model: (a) LR; (b) CART; (c) C4.5; (d) C5.0.
The performance of the LR, CART, C4.5, and C5.0 methods.
| Methods | Accuracy | Sensitivity | Specificity | AUC | F1 Score |
|---|---|---|---|---|---|
| LR | 0.862(0.08) | 0.892(0.11) | 0.702(0.27) | 0.797(0.17) | 0.915(0.06) |
| CART | 0.942(0.02) | 0.993(0.02) | 0.633(0.10) | 0.811(0.05) | 0.967(0.01) |
| C4.5 | 0.929(0.03) | 0.978(0.03) | 0.639(0.09) | 0.810(0.05) | 0.959(0.02) |
| C5.0 | 0.942(0.02) | 0.994(0.02) | 0.639(0.09) | 0.814(0.05) | 0.967(0.01) |
LR—logistic regression; CART—classification and regression tree; C4.5—C4.5 decision tree; C5.0—C5.0 decision tree.
Figure 4ROC curves of the four decision tree algorithms: (a) LR; (b) CART; (c) C4.5; (d) C5.0.
Figure 5Decision rules for the prediction of ICU admission in MG patients based on important clinical factors of the best C5.0 model.
Summarized decision rules of combinations of clinical factors.
| Rules No. | Combinations of Clinical Factors | Cases | Positive/Negative | Accuracy |
|---|---|---|---|---|
| 1 | MGFA (>4) | 9 | Positive | 100% |
| 2 | MGFA (≤4) + Thymoma (No) | 81 | Negative | 98.7% |
| 3 | MGFA (≤4) + Thymoma (Yes) + AZA(No) | 47 | Negative | 95.7% |
| 4 | MGFA (≤4) + Thymoma (Yes) + AZA(Yes) + Disease duration (>41) | 14 | Negative | 92.8% |
| 5 | MGFA (≤4) + Thymoma (Yes) + AZA(Yes) + Disease duration (≤41) + Gender (Male) | 4 | Positive | 100% |
| 6 | MGFA (≤4) + Thymoma (Yes) + AZA(Yes) + Disease duration (≤41) + Gender (Female)+Age at present (≤50) | 2 | Positive | 100% |
| 7 | MGFA (≤4) + Thymoma (Yes) + AZA(Yes) + Disease duration (≤41 + Gender (Female)+Age at present (>50) | 2 | Negative | 100% |
Note: AZA—Azathioprine.