Literature DB >> 35050691

Detecting Cardiovascular Protein-Protein Interactions by Proximity Proteomics.

Jared S Kushner1, Guoxia Liu1, Robyn J Eisert2, Gary A Bradshaw2, Geoffrey S Pitt3, J Travis Hinson4,5, Marian Kalocsay2, Steven O Marx1,6.   

Abstract

Rapidly changing and transient protein-protein interactions regulate dynamic cellular processes in the cardiovascular system. Traditional methods, including affinity purification and mass spectrometry, have revealed many macromolecular complexes in cardiomyocytes and the vasculature. Yet these methods often fail to identify in vivo or transient protein-protein interactions. To capture these interactions in living cells and animals with subsequent mass spectrometry identification, enzyme-catalyzed proximity labeling techniques have been developed in the past decade. Although the application of this methodology to cardiovascular research is still in its infancy, the field is developing rapidly, and the promise is substantial. In this review, we outline important concepts and discuss how proximity proteomics has been applied to study physiological and pathophysiological processes relevant to the cardiovascular system.

Entities:  

Keywords:  animals; mass spectrometry; muscle cells; protein interaction mapping; proteomics

Mesh:

Substances:

Year:  2022        PMID: 35050691      PMCID: PMC8852690          DOI: 10.1161/CIRCRESAHA.121.319810

Source DB:  PubMed          Journal:  Circ Res        ISSN: 0009-7330            Impact factor:   17.367


  74 in total

1.  Loss of caveolae, vascular dysfunction, and pulmonary defects in caveolin-1 gene-disrupted mice.

Authors:  M Drab; P Verkade; M Elger; M Kasper; M Lohn; B Lauterbach; J Menne; C Lindschau; F Mende; F C Luft; A Schedl; H Haller; T V Kurzchalia
Journal:  Science       Date:  2001-08-09       Impact factor: 47.728

2.  Probing nuclear pore complex architecture with proximity-dependent biotinylation.

Authors:  Dae In Kim; K C Birendra; Wenhong Zhu; Khatereh Motamedchaboki; Valérie Doye; Kyle J Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-03       Impact factor: 11.205

3.  Suspect that modulates the heartbeat is ensnared.

Authors:  Xiaohan Wang; Richard W Tsien
Journal:  Nature       Date:  2020-01       Impact factor: 49.962

4.  β-adrenergic regulation of the L-type Ca2+ channel does not require phosphorylation of α1C Ser1700.

Authors:  Lin Yang; Alexander Katchman; Tahmina Samad; John Morrow; Richard Weinberg; Steven O Marx
Journal:  Circ Res       Date:  2013-07-03       Impact factor: 17.367

Review 5.  The enzymatic biotinylation of proteins: a post-translational modification of exceptional specificity.

Authors:  A Chapman-Smith; J E Cronan
Journal:  Trends Biochem Sci       Date:  1999-09       Impact factor: 13.807

6.  Off-the-shelf proximity biotinylation for interaction proteomics.

Authors:  Irene Santos-Barriopedro; Guido van Mierlo; Michiel Vermeulen
Journal:  Nat Commun       Date:  2021-08-18       Impact factor: 17.694

7.  Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.

Authors:  Hyun-Woo Rhee; Peng Zou; Namrata D Udeshi; Jeffrey D Martell; Vamsi K Mootha; Steven A Carr; Alice Y Ting
Journal:  Science       Date:  2013-01-31       Impact factor: 47.728

8.  Modular Detection of GFP-Labeled Proteins for Rapid Screening by Electron Microscopy in Cells and Organisms.

Authors:  Nicholas Ariotti; Thomas E Hall; James Rae; Charles Ferguson; Kerrie-Ann McMahon; Nick Martel; Robyn E Webb; Richard I Webb; Rohan D Teasdale; Robert G Parton
Journal:  Dev Cell       Date:  2015-11-12       Impact factor: 12.270

9.  Directed evolution of APEX2 for electron microscopy and proximity labeling.

Authors:  Stephanie S Lam; Jeffrey D Martell; Kimberli J Kamer; Thomas J Deerinck; Mark H Ellisman; Vamsi K Mootha; Alice Y Ting
Journal:  Nat Methods       Date:  2014-11-24       Impact factor: 28.547

10.  In vivo proximity labeling identifies cardiomyocyte protein networks during zebrafish heart regeneration.

Authors:  Mira I Pronobis; Susan Zheng; Sumeet Pal Singh; Joseph A Goldman; Kenneth D Poss
Journal:  Elife       Date:  2021-03-25       Impact factor: 8.140

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  1 in total

1.  Vasculature remodeling by pressure, caveolae, calcium, and kinases.

Authors:  Abigail M Marx; Steven O Marx
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-18       Impact factor: 12.779

  1 in total

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