| Literature DB >> 35049901 |
Noora Barzkar1, Saeid Tamadoni Jahromi2, Fabio Vianello3.
Abstract
Cardiovascular diseases (CVDs) have emerged as a major threat to global health resulting in a decrease in life expectancy with respect to humans. Thrombosis is one of the foremost causes of CVDs, and it is characterized by the unwanted formation of fibrin clots. Recently, microbial fibrinolytic enzymes due to their specific features have gained much more attention than conventional thrombolytic agents for the treatment of thrombosis. Marine microorganisms including bacteria and microalgae have the significant ability to produce fibrinolytic enzymes with improved pharmacological properties and lesser side effects and, hence, are considered as prospective candidates for large scale production of these enzymes. There are no studies that have evaluated the fibrinolytic potential of marine fungal-derived enzymes. The current review presents an outline regarding isolation sources, production, features, and thrombolytic potential of fibrinolytic biocatalysts from marine microorganisms identified so far.Entities:
Keywords: cardiovascular diseases; fibrinolytic enzymes; marine microorganisms; thrombolytic activity
Mesh:
Substances:
Year: 2022 PMID: 35049901 PMCID: PMC8779250 DOI: 10.3390/md20010046
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Marine sources of fibrinolytic enzymes.
| Isolated From | Microorganism | Enzyme | Reference |
|---|---|---|---|
| Marine sediment from Kovalam beach, Chennai, Tamil Nadu |
| - | [ |
| Marine brown tube sponges | - | [ | |
| Soil samples from South East Coast of India, Chennai | [ | ||
| Marine water sample |
| Thrombinase | [ |
| Mangrove Sediments Pitchavaram, South East Coast of India |
| - | [ |
| Marine sediments of Ezhara beach, Kannur District, Kerala, India | - | [ | |
| Mangrove sediments of Pulicat Lake, India | Bacterial strain GPJ3 | - | [ |
| South West Coast of India |
| - | [ |
| Mutagenesis of |
| - | [ |
| Surface seawater |
| Bvsp | [ |
| Fish scales, Kanyakumari, India | - | [ | |
| Coast of Beihai prefecture of China | - | [ | |
| Deep-sea sediment of Bay of Bengal | - | [ | |
| Jeotgal from gul (Oyster, | AprEBS15 | [ | |
| Marine niches covering 300 km of the western seacoast of Maharashtra, India | - | [ | |
| Oriyara beach in Kasargod district, Kerala, India | - | [ | |
| Jeotgal from munggae (sea squirt), Korean fermented seafood | AprEBS2 | [ | |
| Sea mud | - | [ | |
| Sea water collected from a depth of 10 m, 5 km away from Surathkal Coast in the Arabian Sea | - | [ | |
| Jeotgals from salted saeu (small shrimp), Korean fermented seafoods | AprEJS2 | [ | |
| Marine isolate | - | [ | |
| Jeotgal, Korean fermented seafood | BpKJ-31 | [ | |
| Culture Collection of Algae, University of Texas, Austin | - | [ | |
| University of Texas, Austin |
| - | [ |
| Dalian Institute of Chemical Physics, Chinese Academy of Sciences |
| - | [ |
Purification strategies for isolating fibrinolytic enzymes from marine microorganisms.
| Source | Enzyme | Purification Methods | Total Protein | Specific Activity (U mg−1) | Purification (Fold) | Yield (%) | References |
|---|---|---|---|---|---|---|---|
|
| - | Ammonium sulphate precipitation (20%, 40% and 60%), Sephadex G-75 chromatography | 4.4 | 315.2 | 5.2 | 10.8 | [ |
| AprEBS15 | Affinity chromatography by HiTrap IMAC FF column | - | - | - | - | [ | |
| AprEBS2 | Affinity chromatography by HiTrap IMAC FF column | - | 131.15 m | - | - | [ | |
| - | Ammonium sulphate precipitation, alkaline solution treatment, membrane concentration, dialysis, ion exchange and gel filtration chromatography | 12 | 62,745 | 30 | 13 | [ | |
| AprEJS2 | Affinity chromatography by HiTrap IMAC FF column | - | - | - | - | [ | |
| - | Ammonium sulfate precipitation (40%), dialysis, Fast protein liquid chromatograghy | 0.03 | 1033 | 21.08 | 19.38 | [ | |
| - | Ammonium sulphate precipitation (50–80%), DEAE Sepharose, Sepharose 6B chromatography | 0.8 mg∙mL−1 | 1491.50 | 13.52 | 17.79 | [ | |
| BpKJ-31 | DEAE-Sepharose FF column and gel filtration chromatography (HiPrep 16/60 Sephacryl S-200 HR column) | 3.2 | 242.8 | 19 | 0.2 | [ | |
| - | Ammonium sulfate precipitation (0–60%), UnoQ Sepharose Strong Anion Exchanger, Butyl Sepharose FF chromatography | 0.669 | 280 | 32.42 | 7.5 | [ | |
|
| - | Ammonium sulfate precipitation (60%), dialysis, size exclusion gel filtration chromatography | - | - | - | - | [ |
| - | Ammonium sulphate precipitation (0–85%), dialysis, ion-exchange chromatography, Size exclusion chromatography | 1.1 | 3891 | 22.36 | 35 | [ | |
|
| - | Ammonium sulfate precipitation (40–70%), anion exchange (DEAE-Sephadex), size exclusion (Superdex 75) chromatography | 0.02 mg∙mL−1 | 7988 | 32.72 | 28.85 | [ |
|
| - | Acetone precipitation, anion exchange chromatography HiTrapTM DEAE FF cloumn | 2.0 | 1834.6 | 2 | 4.0 | [ |
Some physicochemical characteristics of marine microbial fibrinolytic enzymes.
| Source | Enzyme | Molecular Weight (kDa) | pH Opt. | Temp. Opt. (°C) | Activator/Co-Factor (Metal Ions) | Inhibitor | Class | References |
|---|---|---|---|---|---|---|---|---|
|
| - | 32 | 8 | 60 | Mg2+, Mn2+ | Zn2+, Fe2+ and Hg2+ | - | [ |
| AprEBS15 | 27 | 8 | 40 | K+, Mg2+, Zn2+ | Na+, Fe3+, Mn2+, Co2+, PMSF, SDS, EDTA and EGTA | Serine protease | [ | |
| AprEBS2 | 27 | 8 | 37 | Mg2+, Ca2+, Mn2+ | Fe3+, Zn2+, K+, Co2+, PMSF, EDTA, SDS | Serine protease | [ | |
| BpKJ-31 | 37 | 9 | 40 | - | PMSF | Alkaline serine protease | [ | |
| AprEJS2 | 24 | 8 | 40 | K+, Mn2+, Mg2+, Zn2+ | PMSF, EDTA, EGTA | Serine protease | [ | |
| - | 26 | 8 | 45–50 | Mn2+,Ca2+, Mg2+ | PMSF, EDTA, Cu2+, Zn2+ and Co2+ | Serine metalloprotease | [ | |
| - | 39 | 8 | 50 | DTT | PMSF | Thiol-dependent serine protease | [ | |
| - | 28 | 9 | 50 | Ca2+ | Zn2+, Fe3+, Hg2+ and PMSF | Serine protease | [ | |
|
| Bvsp | 34.4 | 6.5 | 54 | Ca2+, Zn2+ and Ba2+ | Na+, K+, NH4+ and Mg2+, PMSF, AEBSF, SDS, Guanidine-HCL, Urea and Isopropyl alcohol | Alkaline serine protease | [ |
| - | 43 | 7 | 55 | Mn2+, Mg2+, Zn2+ | PMSF, EDTA | Serine metalloprotease | [ | |
| - | ~50 | - | - | Na+, K+ and Co2+ | Fe2+, Mn2+ and Zn2+ | Metalloprotease | [ | |
| - | 55.5 | 8 | 50 | Ca2+ and Mg2+ | - | - | [ | |
|
| - | 21 | 7 | 37 | - | - | - | [ |
| - | 38 | 7 | 33 | - | - | Serine endopeptidase | [ | |
| - | 45 | - | - | - | - | - | [ | |
|
| - | 72 | 6 | 40 | Fe2+ | PMSF | Serine metalloprotease | [ |
|
| - | 45 | - | - | Fe2+ | PMSF, EDTA | Serine metalloprotease | [ |
Fibrino(ogen) lytic activity of various marine microbial enzymes.
| Source | Enzyme | Reference | Mode of Action | References |
|---|---|---|---|---|
| AprEBS2 | Strong α-fibrinogenase and moderate β-fibrinogenase | Direct | [ | |
| AprEBS15 | Strong α-fibrinogenase and moderate β-fibrinogenase activities | Direct | [ | |
| AprEJS2 | Strong α-fibrinogenase and moderate β -fibrinogenase activities | Direct | [ | |
| BpKJ-31 | Strong Aα and fibrino (geno) lytic activity | Direct | [ | |
| - | Hydrolyzed α chain of fibrin, followed by the β chain | Direct | [ | |
|
| Bvsp | Digest Aα- and Bβ-chains readily, but the γ-chain of fibrinogen slowly | Direct | [ |
Kinetic properties of fibrinolytic enzymes.
| Source | Enzyme | Substrate Specificity | Vmax | Km | kcat | kcat/Km | Reference |
|---|---|---|---|---|---|---|---|
| AprEBS2 | N-Succ-Ala-Ala-Pro-Phe-pNA | 39.68 μM min−1 | 0.15 mM | 18.14 s−1 | 1.25 × 105 M−1s−1 | [ | |
| AprEBS15 | N-succinyl-ala-ala-pro-phe- pNA | 21.88 μM min−1 | 0.26 mM | 10.02 s−1 | 3.83 × 104 M−1s−1 | [ | |
| AprEJS2 | N-Succ-Ala-Ala-Pro-Phe-pNA | 16.71 μM min−1 | 0.09 mM | 7.66 s−1 | 8.51 × 104 M−1s−1 | [ | |
| - | N-Succ-Ala-Ala-Pro-Phe-pNA | - | - | - | - | [ | |
| BpKJ-31 | N-Succ-Ala-Ala-Pro-Phe-pNA | - | - | - | - | [ | |
| - | Fibrin | 15.873 µmol min−1 | 0.66 mg mL−1 | 12.21 min−1 | 18.32 mL mg−1 min−1 | [ | |
|
| Fibase | - | 0.03 mM min−1 | 2.7 mmol L−1 | - | - | [ |
|
| Bvsp | Fibrin | 49.8 g mL−1 min−1 | 0.319 g mL−1 | 4.35 min−1 | 13.63 mL mg−1 min−1 | [ |
Cloning and expression parameters used for fibrinolytic enzymes production.
| Bacterial Strain | Gene | Primer | Cloning Host | Cloning Vector | Expression Host | Expression Vector | References |
|---|---|---|---|---|---|---|---|
|
| CH51-F (5′-AGGATCCCAAGAGAGCGATTGCGGCTGTGTAC-3′, BamHI site underlined) CH51-R (5′-AGAATTCTTCAGAGGGAGCCACCCGTCGATCA-3′, EcoRI site underlined) | pHY300PLK | pETBS2 | [ | |||
|
| CH51-F (5′-AGGATCCCAAGAGAGCGATTGCGGCTGTGTAC-3′, BamHI site underlined) and CH51-R (5′-AGAATTCTTCAGAGGGAGCCACCCGTCGATCA-3′, EcoRI site underlined) | pHY300PLK | pHYJS2 | [ | |||
|
| CH51-F (5′-AGGATC CCAAGAGAGCGATTGCGGCTGTGTAC-3′, BamHI site underlined) and CH51-R (5′-AGAATTCTTCAGAGG GAGCCACCCGTCGATCA-3′, EcoRI site underlined) | pHY300PLK | pHYBS15 | [ | |||
|
|
| BVSPF (5′-CGCGGATCC-ATGCAAGGTGAAATTAGGTTAATTCCATATTT-3′) containing BamH I and BVSPR (5′-CCGCTCGAGTCAGCCAATCTGTGCAAGTGGC-3′, Xho I sites (underlined) | - | - | pGEX-6P-bvsp | [ | |
|
| SPro F (5′-CCG GAT CCA TGG CGT TCA GCA AC-3′) and SPro R (5′-GGC TCG AGT TAG CGG GCA GGT GC-3′) |
| pGEM-T | pET-28a-(+) | [ | ||
|
|
| bar1F (5′-TCTGCACCATCGTCAACCACTACA-3′), bar1R (5′-TCAAATCTCGGTGACGGGCAGGAC-3′), rpa3F (5′-TCTTGGGCAGAACATACC-3′) and rpa3R (5′ -TCCCCCTGAACCTGAAAC-3′) |
| - | pSVrPA/CaMVbar | [ |