Literature DB >> 35046630

STRUCTURED CORRELATION DETECTION WITH APPLICATION TO COLOCALIZATION ANALYSIS IN DUAL-CHANNEL FLUORESCENCE MICROSCOPIC IMAGING.

Shulei Wang1, Jianqing Fan2, Ginger Pocock3, Ellen T Arena3, Kevin W Eliceiri3, Ming Yuan4.   

Abstract

Current workflows for colocalization analysis in fluorescence microscopic imaging introduce significant bias in terms of the user's choice of region of interest (ROI). In this work, we introduce an automatic, unbiased structured detection method for correlated region detection between two random processes observed on a common domain. We argue that although intuitive, using the maximum log-likelihood statistic directly suffers from potential bias and substantially reduced power. Therefore, we introduce a simple size-based normalization to overcome this problem. We show that scanning using the proposed statistic leads to optimal correlated region detection over a large collection of structured correlation detection problems.

Entities:  

Keywords:  Colocalization analysis; optimal rate; scan statistics; signal detection; structured signal

Year:  2021        PMID: 35046630      PMCID: PMC8765712          DOI: 10.5705/ss.202018.0230

Source DB:  PubMed          Journal:  Stat Sin        ISSN: 1017-0405            Impact factor:   1.261


  13 in total

1.  A practical guide to evaluating colocalization in biological microscopy.

Authors:  Kenneth W Dunn; Malgorzata M Kamocka; John H McDonald
Journal:  Am J Physiol Cell Physiol       Date:  2011-01-05       Impact factor: 4.249

2.  Kinetic and molecular analysis of nuclear export factor CRM1 association with its cargo in vivo.

Authors:  Dirk Daelemans; Sylvain V Costes; Stephen Lockett; George N Pavlakis
Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

3.  A guided tour into subcellular colocalization analysis in light microscopy.

Authors:  S Bolte; F P Cordelières
Journal:  J Microsc       Date:  2006-12       Impact factor: 1.758

4.  A guide to accurate fluorescence microscopy colocalization measurements.

Authors:  Jonathan W D Comeau; Santiago Costantino; Paul W Wiseman
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

5.  Replicate-based noise corrected correlation for accurate measurements of colocalization.

Authors:  J Adler; S N Pagakis; I Parmryd
Journal:  J Microsc       Date:  2008-04       Impact factor: 1.758

6.  Measurement of co-localization of objects in dual-colour confocal images.

Authors:  E M M Manders; F J Verbeek; J A Aten
Journal:  J Microsc       Date:  1993-03       Impact factor: 1.758

7.  Optimal Sparse Segment Identification with Application in Copy Number Variation Analysis.

Authors:  X Jessie Jeng; T Tony Cai; Hongzhe Li
Journal:  J Am Stat Assoc       Date:  2012-01-01       Impact factor: 5.033

8.  CRM1 is responsible for intracellular transport mediated by the nuclear export signal.

Authors:  M Fukuda; S Asano; T Nakamura; M Adachi; M Yoshida; M Yanagida; E Nishida
Journal:  Nature       Date:  1997-11-20       Impact factor: 49.962

9.  Dynamics of three-dimensional replication patterns during the S-phase, analysed by double labelling of DNA and confocal microscopy.

Authors:  E M Manders; J Stap; G J Brakenhoff; R van Driel; J A Aten
Journal:  J Cell Sci       Date:  1992-11       Impact factor: 5.285

10.  New image colocalization coefficient for fluorescence microscopy to quantify (bio-)molecular interactions.

Authors:  H D Herce; C S Casas-Delucchi; M C Cardoso
Journal:  J Microsc       Date:  2013-01-10       Impact factor: 1.758

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  3 in total

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Authors:  Ronak Mehta; Hyunwoo J Kim; Shulei Wang; Sterling C Johnson; Ming Yuan; Vikas Singh
Journal:  Q Appl Math       Date:  2018-12-17       Impact factor: 0.815

2.  Colocalization for super-resolution microscopy via optimal transport.

Authors:  Carla Tameling; Stefan Stoldt; Till Stephan; Julia Naas; Stefan Jakobs; Axel Munk
Journal:  Nat Comput Sci       Date:  2021-03-25

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Authors:  Shulei Wang; T Tony Cai; Hongzhe Li
Journal:  Biometrika       Date:  2020-07-11       Impact factor: 2.445

  3 in total

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