| Literature DB >> 35044204 |
Evan J Beck1, Yu-Hsiang Hsieh2, Reinaldo E Fernandez3, Gaby Dashler2, Emily R Egbert4, Shawn A Truelove5, Caroline Garliss3, Richard Wang2, Evan M Bloch6, Ruchee Shrestha6, Joel Blankson3, Andrea L Cox3, Yukari C Manabe3, Thomas Kickler6, Richard E Rothman2, Andrew D Redd1,3, Aaron A R Tobian6, Aaron M Milstone4,7, Thomas C Quinn1,3,7, Oliver Laeyendecker1,3,7.
Abstract
Emergency departments (EDs) can serve as surveillance sites for infectious diseases. The objective of this study was to determine the burden of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and to monitor the prevalence of vaccination against coronavirus disease 2019 (COVID-19) among patients attending an urban ED in Baltimore City. Using 1,914 samples of known exposure status, we developed an algorithm to differentiate previously infected, vaccinated, and unexposed individuals using a combination of antibody assays. We applied this testing algorithm to 4,360 samples from ED patients obtained in the spring of 2020 and 2021. Using multinomial logistic regression, we determined factors associated with infection and vaccination. For the algorithm, sensitivity and specificity for identifying vaccinated individuals were 100% and 99%, respectively, and 84% and 100% for previously infected individuals. Among the ED subjects, seroprevalence to SARS-CoV-2 increased from 2% to 24% between April 2020 and March 2021. Vaccination prevalence rose to 11% by mid-March 2021. Marked differences in burden of disease and vaccination coverage were seen by sex, race, and ethnicity. Hispanic patients, though accounting for 7% of the study population, had the highest relative burden of disease (17% of total infections) but with similar vaccination rates. Women and white individuals were more likely to be vaccinated than men or Black individuals. Individuals previously infected with SARS-CoV-2 can often be differentiated from vaccinated individuals using a serologic testing algorithm. The utility of this algorithm can aid in monitoring SARS-CoV-2 exposure and vaccination uptake frequencies and can potentially reflect gender, race, and ethnic health disparities.Entities:
Keywords: COVID-19 vaccination prevalence; emergency department; factors associated with SARS-CoV-2 infection; seroprevalence of SARS-CoV-2 antibody
Mesh:
Year: 2022 PMID: 35044204 PMCID: PMC8925900 DOI: 10.1128/jcm.02390-21
Source DB: PubMed Journal: J Clin Microbiol ISSN: 0095-1137 Impact factor: 5.948
Description of cohorts
| Cohort name (IRB no.) | Purpose | No. of samples | Notes |
|---|---|---|---|
| NIH phase 1 vaccine trial (20-0003) | Positive control, known SARS-CoV-2 vaccinated | 68 | 68 samples from vaccinated individuals with no prior infection |
| JHHS health care professionals (IRB00249350) | Positive control, known SARS-CoV-2 vaccinated and some previously infected | 410 | 360 samples from vaccinated individuals with no prior infection; 28 samples from vaccinated individuals with prior infection; 18 samples from vaccinated individuals with suspected prior infection; 4 samples from unvaccinated individuals with prior infection |
| Potential convalescent plasma donors (IRB00250798) | Positive control, known SARS-CoV-2 infected | 244 | Known infected (PCR positive) and nonvaccinated |
| CCPSEI (IRB00247886 and IRB00091667) | Positive control, known SARS-CoV-2 infected | 246 | Known infected (PCR positive) and nonvaccinated |
| JHH ED 2016 (NA_00085477) | Prepandemic negative control | 992 | Prepandemic samples from the same survey site as pandemic surveillance site |
| JHH ED 2020: 16 March to 30 April (IRB00083646, CIR0016268) | Algorithm application | 1,536 | Population surveillance |
| JHH ED 2021: 11 January to 10 March (IRB00083646, CIR0016268) | Algorithm application | 2,824 | Population surveillance |
Abbreviations: CCPSEI, Clinical Characterization Protocol for Severe Infectious Diseases; ED, emergency department; JHHS, Johns Hopkins Healthcare System; JHH Johns Hopkins Hospital.
FIG 1Antibody testing algorithm. An S/C of ≥0.8 on the Euroimmun anti-SARS-CoV-2 ELISA (S1) and a positive result on the CoronaCHEK COVID-19 IgG/IgM rapid test cassette (RBD) were considered positive for the SARS-CoV-2 spike protein. An S/C of ≥0.8 on Bio-Rad Platelia SARS-CoV-2 total-antibody ELISA (nucleocapsid) was considered a previous infection, whereas an S/C of <0.8 in combination with a positive result for spike/RBD indicated vaccination. Samples with negative tests by either Euroimmun or CoronaCHEK were considered unexposed to either SARS-CoV-2 infection or COVID-19 vaccination.
FIG 2Testing algorithm results on samples from known vaccinated, previously infected, and prepandemic samples.
Classification as vaccinated by testing algorithm
| Classification by algorithm | No. of samples | |
|---|---|---|
| Known vaccinated | Not vaccinated | |
| Vaccinated (Euroimmun and CoronaCHEK positive, Bio-Rad negative) | 428 | 17 |
| Not vaccinated (any other result) | 0 | 1,469 |
Classification as previously infected by testing algorithm
| Classification by algorithm | No. of samples | |
|---|---|---|
| Infected | Not infected | |
| Infected (Euroimmun, CoronaCHEK, and Bio-Rad positive) | 417 | 0 |
| Not infected (any other result) | 77 | 1,420 |
FIG 3Comparison of ELISA values between vaccinated and previously infected individuals. Samples with known serostatus from the algorithm validation cohorts were tested on both the Euroimmun anti-SARS-CoV-2 IgG ELISA (spike) and on Bio-Rad Platelia SARS-CoV-2 total-antibody ELISA (nucleocapsid). Each ELISA generates a ratio of the optical density of the sample to that of a manufacturer-provided calibrator. The y axis is given as a signal-to-cutoff ratio (S/C). Medians and interquartile ranges are displayed for each violin plot. The vaccinated group comprised individuals with documented vaccination and no previous positive PCR or serological result. SARS-CoV-2 infections were confirmed by a positive PCR result. The vaccination-and-confirmed-infection group was composed of individuals with both documented vaccination and PCR-positive infection. Presumed infections were characterized by a lack of PCR-positive result but a positive result for nucleocapsid on the Bio-Rad assay. Samples in the not-vaccinated-or-infected category were obtained from the JHH ED in 2016, prior to the advent of the COVID-19 pandemic.
FIG 4Seroprevalence of antibodies of SARS-CoV-2 2020 to 2021. JHH ED samples from 2020 and 2021 were tested on the previously mentioned algorithm and categorized according to the date on which the sample was drawn.
Demographic characteristics and seroprevalence of infection and vaccination in emergency department patients in the spring of 2020 and 2021
| Characteristic | Category | No. of patients (%) | ||||
|---|---|---|---|---|---|---|
| 16 March to 30 April 2020 | 11 January to 10 March 2021 | |||||
| Total ( | Previously infected ( | Total ( | Previously infected ( | Vaccinated ( | ||
| Age (yrs) | 18–29 | 285 | 3 (1.1) | 578 | 103 (23.2) | 51 (8.8) |
| 30–44 | 411 | 2 (0.5) | 763 | 128 (28.8) | 70 (9.2) | |
| 45–59 | 434 | 9 (2.1) | 664 | 100 (22.5) | 31 (4.7) | |
| 60–74 | 318 | 9 (2.8) | 599 | 80 (18.0) | 58 (9.7) | |
| ≥75 | 87 | 3 (3.4) | 215 | 32 (14.9) | 19 (8.8) | |
| Missing | 1 | 0 (0.0) | 5 | 1 (20.0) | 0 (0.0) | |
| Ethnicity, race, sex | NH Black female | 490 | 4 (0.8) | 880 | 150 (17.0) | 55 (6.3) |
| NH white female | 201 | 0 (0.0) | 442 | 38 (8.6) | 61 (13.8) | |
| Hispanic female | 54 | 2 (3.7) | 95 | 37 (38.9) | 8 (8.4) | |
| Other female | 47 | 3 (6.4) | 108 | 17 (15.7) | 15 (13.9) | |
| NH Black male | 436 | 7 (2.3) | 738 | 101 (13.7) | 33 (4.4) | |
| NH white male | 197 | 3 (1.7) | 382 | 51 (13.4) | 37 (9.7) | |
| Hispanic male | 61 | 2 (3.3) | 96 | 36 (37.5) | 11 (11.5) | |
| Other male | 50 | 2 (4.0) | 83 | 14 (16.9) | 9 (10.8) | |
NH, non-Hispanic.
Factors associated with positivity for SARS-CoV-2 antibodies among individuals attending the JHH ED between 11 January and 10 March 2021
| Characteristic | Category | Previous infection | Vaccination | ||
|---|---|---|---|---|---|
| OR (95% CI) | aOR (95% CI) | OR (95% CI) | aOR (95% CI) | ||
| Age (yrs) | 18–29 | 1 | 1 | 1 | 1 |
| 30–44 | 0.93 (0.70–1.24) | 0.86 (0.64–1.16) | 1.04 (0.72–1.52) | 0.99 (0.67–1.46) | |
| 45–59 | 0.82 (0.61–1.11) | 0.84 (0.62–1.14) |
|
| |
| 60–74 |
| 0.76 (0.55–1.06) | 1.11 (0.75–1.64) | 1.13 (0.75–1.69) | |
| ≥75 | 0.81 (0.52–1.24) | 0.94 (0.60–1.46) | 1.00 (0.58–1.74) | 0.88 (0.50–1.55) | |
| Missing | NE | NE | NE | NE | |
| Ethnicity, race, sex | NH Black female | 1 | 1 | 1 | 1 |
| NH white female |
|
|
|
| |
| Hispanic female |
|
| 1.38 (0.64–2.99) | 1.36 (0.62–2.97) | |
| Other female | 0.91 (0.53–1.57) | 0.92 (0.53–1.60) |
|
| |
| NH white male | 0.75 (0.53–1.06) | 0.77 (0.55–1.09) |
|
| |
| NH Black male | 0.77 (0.59–1.02) | 0.79 (0.60–1.04) | 0.70 (0.45–1.09) | 0.72 (0.46–1.13) | |
| Hispanic male |
|
| 1.94 (0.98–3.85) |
| |
| Other male | 0.99 (0.54–1.80) | 0.99 (0.54–1.81) | 1.82 (0.87–3.84) | 1.87 (0.89–3.94) | |
ORs with P values of <0.05 are shown in boldface type. NH, non-Hispanic; NE, not examined.