Literature DB >> 35037211

Making a Pangenome Using the Iterative Mapping Approach.

Cassandria Tay Fernandez1.   

Abstract

Pangenomes have replaced single reference genomes as genetic references, as they contain a better scope of the diversity found in a single species. This protocol outlines the iterative mapping approach in constructing a pangenome, including how to check the raw data, align the data to a reference, how to assemble the data, and how to remove potential contaminants from the final assembly.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Bioinformatics; Iterative mapping; Pangenome; Pangenomics; Plant genome

Year:  2022        PMID： 35037211     DOI： 10.1007/978-1-0716-2067-0_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  1 in total

1.  Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica.

Authors:  Michael C Schatz; Lyza G Maron; Joshua C Stein; Alejandro Hernandez Wences; James Gurtowski; Eric Biggers; Hayan Lee; Melissa Kramer; Eric Antoniou; Elena Ghiban; Mark H Wright; Jer-ming Chia; Doreen Ware; Susan R McCouch; W Richard McCombie
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583
  1 in total

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