| Literature DB >> 35037201 |
Sven Redsun1, Sam Hokin1, Connor T Cameron1, Alan M Cleary1, Joel Berendzen1, Sudhansu Dash1, Anne V Brown2, Andrew Wilkey3, Jacqueline D Campbell2,4, Wei Huang2, Scott R Kalberer2, Nathan T Weeks2, Steven B Cannon5, Andrew D Farmer1.
Abstract
In this chapter, we introduce the main components of the Legume Information System ( https://legumeinfo.org ) and several associated resources. Additionally, we provide an example of their use by exploring a biological question: is there a common molecular basis, across legume species, that underlies the photoperiod-mediated transition from vegetative to reproductive development, that is, days to flowering? The Legume Information System (LIS) holds genetic and genomic data for a large number of crop and model legumes and provides a set of online bioinformatic tools designed to help biologists address questions and tasks related to legume biology. Such tasks include identifying the molecular basis of agronomic traits; identifying orthologs/syntelogs for known genes; determining gene expression patterns; accessing genomic datasets; identifying markers for breeding work; and identifying genetic similarities and differences among selected accessions. LIS integrates with other legume-focused informatics resources such as SoyBase ( https://soybase.org ), PeanutBase ( https://peanutbase.org ), and projects of the Legume Federation ( https://legumefederation.org ).Entities:
Keywords: CoNekT; Comparative genomics; Days to flower; GWAS; Gene families; Genome context viewer; InterMine; Legume information system; Pan-genome; ZZBrowse
Mesh：
Year: 2022 PMID： 35037201 DOI： 10.1007/978-1-0716-2067-0_4
Source DB: PubMed Journal: Methods Mol Biol ISSN： 1064-3745