A combined experimental and theoretical study of the electron donor 4-dimethylaminopyridine (4-DMAP) with the electron acceptor 2, 3-dichloro-5, 6-dicyano-p-benzoquinone (DDQ) has been made in acetonitrile (ACN) and methanol (MeOH) media at room temperature. The stoichiometry proportion of the charge transfer (CT) complex was determined using Job's and photometric titration methods and found to be 1:1. The association constant (K CT), molar absorptivity (ε), and spectroscopic physical parameters were used to know the stability of the CT complex. The CT complex shows maximum stability in a high-polar solvent (ACN) compared to a less-polar solvent (MeOH). The prepared complex was characterized by Fourier transform infrared, NMR, powder X-ray diffraction, and scanning electron microscopy-energy-dispersive X-ray analysis. The nature of DNA binding ability of the complex was probed using UV-visible spectroscopy, and the binding mode of the CT complex is intercalative. The intrinsic binding constant (K b) value is 1.8 × 106 M-1. It reveals a primary indication for developing a pharmaceutical drug in the future due to its high binding affinity with the CT complex. The theoretical study was carried out by density functional theory (DFT), and the basis set is wB97XD/6-31G(d,p), with gas-phase and PCM analysis, which supports experimental results. Natural atomic charges, state dipole moments, electron density difference maps, reactivity parameters, and FMO surfaces were also evaluated. The MEP maps indicate the electrophilic nature of DDQ and the nucleophilic nature of 4-DMAP. The electronic spectrum computed using time-dependent DFT (TD-DFT) via a polarizable continuum salvation approach, PCM/TD-DFT, along with natural transition orbital analysis is fully correlated with the experimental outcomes.
A combined experimental and theoretical study of the electron donor 4-dimethylaminopyridine (4-DMAP) with the electron acceptor 2, 3-dichloro-5, 6-dicyano-p-benzoquinone (DDQ) has been made in acetonitrile (ACN) and methanol (MeOH) media at room temperature. The stoichiometry proportion of the charge transfer (CT) complex was determined using Job's and photometric titration methods and found to be 1:1. The association constant (K CT), molar absorptivity (ε), and spectroscopic physical parameters were used to know the stability of the CT complex. The CT complex shows maximum stability in a high-polar solvent (ACN) compared to a less-polar solvent (MeOH). The prepared complex was characterized by Fourier transform infrared, NMR, powder X-ray diffraction, and scanning electron microscopy-energy-dispersive X-ray analysis. The nature of DNA binding ability of the complex was probed using UV-visible spectroscopy, and the binding mode of the CT complex is intercalative. The intrinsic binding constant (K b) value is 1.8 × 106 M-1. It reveals a primary indication for developing a pharmaceutical drug in the future due to its high binding affinity with the CT complex. The theoretical study was carried out by density functional theory (DFT), and the basis set is wB97XD/6-31G(d,p), with gas-phase and PCM analysis, which supports experimental results. Natural atomic charges, state dipole moments, electron density difference maps, reactivity parameters, and FMO surfaces were also evaluated. The MEP maps indicate the electrophilic nature of DDQ and the nucleophilic nature of 4-DMAP. The electronic spectrum computed using time-dependent DFT (TD-DFT) via a polarizable continuum salvation approach, PCM/TD-DFT, along with natural transition orbital analysis is fully correlated with the experimental outcomes.
The molecular interactions
between electron-deficient and electron-rich
molecules are related to the formation of intensity-colored charge
transfer (CT) complexes, which absorb radiation within the visible
region.[1] The term charge transfer phenomenon
was first introduced by Mulliken[2,3] and was discussed by
Foster.[4] The CT complexes are widely utilized
in a large number of applications including heterogeneous catalysis,[5] surface chemistry,[6] photocatalysis,[7] gas sensing,[8] oil–water separation,[9] and so forth. Moreover, DNA binding studies of the complex
are one among the foremost important aspects in biological investigation
with various sorts of drugs, proteins, and enzymes.[10] UV–visible spectroscopy is one among the foremost
common techniques used to examine the binding mode between the CT
complex and DNA.[11] The DNA interaction
is vital for understanding the molecular mechanism of CTC action.
Consequently, an understanding of how these tiny molecules bind to
DNA is going to be helpful for the development of new drugs, diagnostic
probes, and reactive agents. Density functional theory (DFT) was found
to be an efficient tool within the study of the association between
structural and spectral properties.[12,13] Moreover,
time-dependent DFT (TD-DFT) has been used to calculate the electronic
absorption spectra of CT complexes.[14,15]Nitrogen-containing
heterocyclic compounds are of interest as electron
donors since they will function as n and π-donors.
Amino pyridines are bioactive N-heterocyclic amines, which increase
the strength of the nerve signal by blocking the voltage-dependent
K+ channel.[16] They constitute
an important group of electron donors, and the study of their CT-interactions
can elucidate various medical and pharmacological applications.[17] The compound 4-dimethylaminopyridine (4-DMAP)
is a pyridine derivative with the chemical formula (CH3)2NC5H4N. This colorless solid is
a useful nucleophilic catalyst for a variety of reactions such as
esterifications with anhydrides and hydrosilylations. Researchers
have worked on the interaction of 4-dimethylaminopyridine (4-DMAP)
with TCNE, TCNQ, and TBCHD.[18] On the other
hand, the benzoquinone derivative of 2,3-dichloro-5,6-dicyano-p-benzoquinone (DDQ) is a famous acceptor in chemical synthesis.
It is used as a mild oxidizing agent in organic chemistry and has
been found to have extraordinary effectiveness as a dehydrogenate.[19] It also produces stable, free ion pair complexes
with many donors.[20] In spite of the abovementioned
pharmaceutical and biological importance of these compounds, we are
pleased to report on the formation of a new CT complex of 4-DMAP and
DDQ in acetonitrile (ACN) (CH3CN) and methanol (CH3OH), studied with a UV–visible spectrophotometer.The first aspect of the present work was to investigate the interaction
between 4-DMAP as a donor and the DDQ as an electron acceptor in ACN
and methanol (MeOH). The properties of the CT complex [(4-DMAP)/(DDQ)]
are investigated by electronic spectra through computing the molar
ratio, formation constant, molar extinction coefficients, charge transfer
energy, and spectroscopic properties such as ionization energy (ID), dissociation energy (W),
resonance energy (RN), and oscillator
strength (f) in the solution state. Herein, we report
the investigation of DNA binding to a new CT complex [(4-DMAP/DDQ)]
examined by UV–visible spectroscopy. The solid complex was
synthesized and characterized by Fourier transform infrared (FT-IR)
and 1H NMR spectroscopy. The second aspect of this work
aims to provide the relevant Supporting Information by applying DFT and TD-DFT analysis. The theoretical UV–visible
and FT-IR spectra analyzed using TD-DFT associated with the polarized
continuum model (PCM) were compared with those obtained experimentally.
Results
and Discussion
Observation of the CT Band
UV visible
spectra of the
DDQ acceptor 1 × 10–3 M (pale yellow), 4-DMAP
donor 1 × 10–3 M (colorless), and the formed
CT complex (reddish brown) in MeCN and MeOH solvent were observed
in the area of 250–800 nm (25 °C) and are displayed in Figure . As can be shown
in Figure , the mixture
spectrum is absolutely different from that of individual donor and
acceptor ones, confirming the CT complex structure. The complex spectrum
included multicharge transfer bands in both polar solvents ACN and
MeOH at 617, 469, and 436 and 626, 476, and 444 nm, respectively,
and the longest wavelength peak was considered as the CT peak.[21] In the time study of the CT complex in can,
the bands at 617 and 436 nm remain constant with time, but a band
at 469 nm disappeared with time, as shown in Figure S1. These multicharge transfer transitions take place from
more than one closely located higher occupied molecular orbital of
the donor to the higher unoccupied molecular orbital(s) of the acceptor.[22] The instantaneous production of constant reddish-brown
color is mainly recognized as the formation of a radical anion of
DDQ resulting in the electron transfer from 4-DMAP to DDQ (Scheme ).
Figure 1
Electronic spectra of
4-DMAP, DDQ, and CTC in ACN and MeOH.
Scheme 1
Mechanism of the 4-DMAP–DDQ Complex Reaction in the Ground
State
Electronic spectra of
4-DMAP, DDQ, and CTC in ACN and MeOH.
Physical Composition of
the CT Complex
The molecular
composition of the CT complex was determined by applying Job’s
continuous variations at 617, and 626 nm[23] in both ACN and MeOH medium shown in (Figure a). Where maximum absorbance achieved at
0.5 mol fraction indicating 1:1 [(4-DMAP)/(DDQ)] stoichiometry for
the complex. Similar results were obtained when applying Job’s
method at 436 and 444 nm in ACN and MeOH solvents. The (Figure b) represents photometric titration
plots in both polar solvents.[24] Here, the
results from both ACN and MeOH indicates the molar ratio of [(4-DMAP)/(DDQ)]
complex is 1:1.
Figure 2
(a) Job’s plot, (b) spectrophotometric plot of
CT complex
in ACN and MeOH.
(a) Job’s plot, (b) spectrophotometric plot of
CT complex
in ACN and MeOH.
Association Constant (KCT), Molar
Absorptivity (εCT), and Energy
Based on
spectral data in (Table ), the association constant KCT (L mol–1) and the molar absorptivity ε (L mol–1)
of the [(4-DMAP)/(DDQ)] complex were calculated using the following
Benesi-Hildebrand[25] at room temperature.
Table 1
Benesi–Hildebrand Data for
the 1:1 CT Complex at 25 °C
Ca
Cd
A
CaCd/A
Ca + Cd
(CaCd/A) × 10–6
(Ca + Cd) × 103
ACN 25 °C
0.001
0.005
0.791
6.32 × 10–6
0.006
6.32
6
0.001
0.0045
0.763
5.89 × 10–6
0.0055
5.89
5.5
0.001
0.004
0.716
5.58 × 10–6
0.005
5.58
5
0.001
0.0035
0.699
5.00 × 10–6
0.0045
5
4.5
0.001
0.003
0.665
4.51 × 10–6
0.004
4.51
4
0.001
0.0025
0.648
3.85 × 10–6
0.0035
3.85
3.5
0.001
0.002
0.618
3.23 × 10–6
0.003
3.23
3
0.001
0.001
0.489
2.04 × 10–6
0.002
2.04
2
MeOH 25 °C
0.001
0.005
0.124
4.02 × 10–5
0.006
4.02
6
0.001
0.0045
0.120
3.7 × 10–5
0.0055
3.7
5.5
0.001
0.004
0.115
3.4 × 10–5
0.005
3.4
5
0.001
0.0035
0.110
3.0 × 10–5
0.0045
3.0
4.5
0.001
0.003
0.104
2.88 × 10–5
0.004
2.88
4
0.001
0.0025
0.098
2.55 × 10–5
0.0035
2.55
3.5
0.001
0.002
0.090
2.22 × 10–5
0.003
2.22
3
0.001
0.0015
0.085
1.76 × 10–5
0.0025
1.76
2.5
0.001
0.001
0.080
1.25 × 10–5
0.002
1.25
2
In eq (, Cd and Ca are the
primary concentrations of the 4-DMAP (varied) and DDQ (fixed) respectively,
and A is the absorbance of the CT complex at 617,
626 nm in ACN and MeOH. Plotting the values of CaCd × 10–6 against (Ca + Cd) a straight line was obtained with a correlation coefficient
(R) in ACN and MeOH was R = 0.9913
and R = 0.9941, supporting the formation of a 1:1
complex shown in (Figure ). The data of stability constant, molar absorptivity, and
wavelength values depicted in (Table ). The KCT value of CT
complex in ACN (5.8 × 104 L mol–1) slightly higher than KCT of (4.49 ×
104 L mol–1) MeOH solvent. The high value
of the stability constant suggest that the formation of CT complex
with high stability. The high values of KCT, ε are pointed to the more donating power of 4-DMAP, high
electron affinity of DDQ (∼1.9 eV) and high electric permittivity
of ACN solvent.
Figure 3
Benesi–Hildebrand plots at room temperature.
Table 2
Formation Constants, Molecular Extinction
Coefficients, and Other Physical Parameters of the CT Complex
solvent
λmax (nm)
KCT × 102 (L mol–1)
εCT × 102 (L mol–1 cm–1)
–ΔG° (kJ/mo)
ECT (eV)
W (eV)
ID (eV)
f
RN
ACN
617
5.88
10.91
–27.20
2.01
4.31
8.22
6.07
0.574
MeOH
626
4.49
6.74
–26.53
1.98
4.30
8.18
2.88
0.565
Benesi–Hildebrand plots at room temperature.The energy (ECT) of the donor–acceptor
interaction was calculated using the following equation derived by
Briegleb and Angew.[26]
Determination
of Physical Parameters
From electronic
spectral studies of the CT complex, several spectroscopic physical
parameters were calculated and the obtained results were analyzed.The ionization energy (IE) of the CT complex was calculated by
the subsequent equation in both polar solvents, which were associated
with Aloisi and Piganatro.[27]In this equation, νCT and ID are the wave number in cm–1 and ionization
energy of the donor molecule, respectively.The resonance energy
(RN) of the CT
complex was evaluated by following the principle of (Brieglb and Czekalla)
in both polar solvents.[28]In this equation, εCT is the molar absorptivity
of the complex at the maximum of the CT band, νCT is the frequency of the CT band, and RN is the resonance
energy of the complex in the ground state, which is a contributing
factor to the stability constant of the complex in both polar solvents.The dissociation energy (W) of the CT complex[29] was estimated by the usage of ECT, IE of the donor (ID), and electron affinity (EA) of
the acceptor from the subsequent equation in different polarities;
these values are depicted in Table .The CT complex has an electronic
absorption spectrum in which the
oscillator strength (f) is a dimensionless quantity
that is utilized for stating the transition probability of CT bands
in both polar solvents and can be determined by the following equation.[30]In this equation, Δν1/2 is the half-band
width and εCT is the molar absorptivity at maximum
absorption of the CT band.The standard Gibbs free energy change
of the complex (ΔG°) was evaluated[31] from
the subsequent equation in both polar solvents.In this equation, ΔG° is the standard
free energy of the CT complex (k J mol–1), R is the gas constant (8.314 J mol–1 K–1), T is the absolute temperature in kelvin (273+ °C),
and KCT is the formation constant of the
CT complex in ACN and MeOH solvents at room temperature. All physical
parameters are mentioned in Table .
FT-IR Spectra
The FT-IR absorption
spectra of 4DMAP,
DDQ, and the [(4-DMAP)/(DDQ)] complex are shown in Figure . The important band assignments
are depicted in Table . The presence of the essential IR bands of the donor and acceptor
in the spectrum of the CT complex strongly favors the CT complexation.[32] However, the bands of the 4-DMAP and DDQ in
this complex reveal small shifts in both band intensities and wave
number values from those of the free reactants. The characteristic
absorption bands were identified in the infrared spectra of free DDQ
at 1651, 2232, 1515, 1165, and 757 cm–1 assigned
to υ (C=O), (C≡N), (C=C), (C–C),
and (C–Cl) respectively. These absorption band shifts in the
complex appeared at 1643, 2205, 1441, 1215, and 741 cm–1. On the other hand, the stretching vibrational frequencies of υ
(C=N), (C–N), and (C–N) are recorded at 1537,
1561, and 1269 cm–1 in the complex spectrum relative
with 1517, 1596, and 1220 cm–1 for the free 4-DMAP,
respectively. All these band shifts clearly show the charge transfer
from 4-DMAP to DDQ. The infrared spectra have been calculated using
the wb97xd method, and the results (Figure S2) and band intensities are found in Table . Close values between calculated and measured
infrared data were detected, confirming the validity of the applied
method for computing infrared spectra.
Figure 4
Experimental FT-IR spectra
(a) 4-DMAP, (b) DDQ, and (c) CTC.
Table 3
Experimental and Calculated Infrared
Frequencies (cm–1) Using the wB97XD Method for the
Studied System
CTC
4-DMAP
DDQ
exp.
calc.
assignments
3023
2910
3049
υ (CH3) aromatic
3278
3043
3278
υ (CH) aliphatic
1596
1561
1584
υ (C=C)
1160
1203
1228
υ (C–C)
1220
1269
1302
υ (C–N)
1651
1643
1655
υ (C=O)
2232
2205
2456
υ (C≡N)
757
741
737
υ (C–Cl)
1515
1441
1409
υ (C=C)
1165
1215
1217
υ (C–C)
Experimental FT-IR spectra
(a) 4-DMAP, (b) DDQ, and (c) CTC.
1H NMR Spectroscopy
The 1H NMR
spectrum of the [(4-DMAP)(DDQ)] complex was recorded in DMSO-d6 solvent, which exhibits a signal at δ
= 3.0, and it is depicted in Figure S3.
The data from 1H NMR were tabulated in Table . The NMR spectra of the complex
show two doublet signals at δ 8.23 and δ 6.98 ppm, which
were assigned to the four aromatic protons of the pyridine ring. The
peak observed at δ 2.51 ppm shows a singlet, which is assigned
to the six methyl protons of the pyridine ring. The consistence of
NMR and IR spectra supports the charge transfer, which is responsible
for its high stability.
Table 4
1H NMR
Spectral Data of
the CT Complex
compound
chemical shift, δ (ppm)
assignments
8.23, 8.21
(d, 2H of the pyridine ring)
[(4-DMAP)(DDQ)]
6.98
(d, 2H Ar–H of 4-DMAP)
3.0
(s, 6H of methyl protons 4-DMAP)
2.5
(s, 6H DMSO solvent)
Determination of the Composition Using Scanning
Electron Microscopy
The surface morphology[33] and elemental
composition of the CT complex [(4-DMAP)/(DDQ)] were studied through
scanning electron microscopy (SEM)–energy dispersive X-ray
(EDX) analysis. The corresponding results are shown in Figure . Needle-shaped microstructures
of the product are detectable from the SEM images. The composition
of the CT complex formed with the donor and acceptor was confirmed
by EDX spectra, which showed C, N, O, and Cl elemental peaks (listed
in Table S1).
Figure 5
SEM images and EDX spectrum
of the CT complex.
SEM images and EDX spectrum
of the CT complex.
Powder X-ray Diffraction
Studies of the CT Complex
Powder X-ray diffraction (PXRD)
is a useful technique to ascertain
the purity and composition of the CT complex. Figure shows the PXRD patterns of 4DMAP, DDQ, and
the [(4-DMAP)/(DDQ)] complex, whereas Table presents their XRD spectral data. A strong
characteristic peak with high intensity was noted at the diffraction
angle 2θ of 19.79, 26.17, and 18.72° for 4-DMAP, DDQ, and
the [(4-DMAP)/(DDQ)] complex, respectively. The PXRD pattern shows
that the material is semicrystaline in nature due to the sharp and
well-defined Bragg peaks at specific 2θ angles of the newly
synthesized CT complex of 4-DMAP and DDQ. The particle size of the
complex was calculated based on the highest intensity line relative
to the other lines using the Debye–Scherrer formula[34] as followswhere D is the crystalline
size in nm, λ is the wavelength of the X-ray used (0.15406 nm),
0.94 is the Scherrer constant, θ is the position of the particular
diffraction peak, and β is the full width at half maximum (fwhm)
of the particular diffraction peak. The calculated particle sizes
of 4-DMAP, DDQ, and the [(4-DMAP)/(DDQ)] complex are 14.68, 4.97,
and 14.07 nm, respectively.
Figure 6
Powder XRD semi-crystalline nature of (a) 4-DMAP,
(b) DDQ, and
(c) CT complex.
Table 5
Powder XRD Spectral
Data for 4-DMAP,
DDQ, and the CT Complex
compound
Bragg angle (2θ)
fwhm (β)
particle
size (nm)
4-DMAP
19.82
0.2547
14.68
DDQ
26.26
0.7171
4.97
CTC
18.76
0.2674
14.07
Powder XRD semi-crystalline nature of (a) 4-DMAP,
(b) DDQ, and
(c) CT complex.
DNA Interaction Study
In the investigations of CT-DNA,
binding analysis of organic compounds through UV absorption spectroscopy
is a prominent method. In general, hypochromism with or without a
small red or blue shift is associated with the intercalative binding
mode between the complex and DNA. After adding the DNA solution to
the complex, the binding interaction of the formed complex through
DNA helices is defined by changes in absorbance and wavelength.[35] The binding affinity was evaluated in this current
study by observing the absorbance alteration of the CT complex when
the CT-DNA concentration rises and when the CT complex concentration
was kept constant. The absorption spectrum of the CT-DNA binding with
the CT complex is presented in Figure . The spectra reveal a blue shift and are hypochromic,
expressing the binding mode of intercalation between the CT-DNA and
CT complex. In this spectrum, we observed a decrease in the absorbance
with an increase in the concentration of CT-DNA to the CT complex,
which confirms the binding mode of the complex with DNA.[1] From the absorption, data were analyzed to evaluate
the intrinsic binding constant (Kb), which
is determined from the following Wolfe–Shimer equation.
Figure 7
Absorption
spectra of 4-DMAP-DDQ in Tris–HCl buffer upon
addition of CT-DNA. [Compound] = 25 μM, [DNA] = 0–10
μM DNA concentration.
Absorption
spectra of 4-DMAP-DDQ in Tris–HCl buffer upon
addition of CT-DNA. [Compound] = 25 μM, [DNA] = 0–10
μM DNA concentration.In this equation, [DNA] is the concentration of CT-DNA, εa is the apparent coefficient, εf and εb correspond to the extinction coefficient of the free and
fully bound complex to DNA molecules, respectively, and Kb is the intrinsic binding constant. From the plot of
DNA/(εa – εf) vs [DNA], Kb is calculated by the ratio of a slope to the
intercept. The ratio of intrinsic binding constant (Kb) values of the complex is 1.8 × 106 M–1. From the abovementioned DNA binding results, it
is evident that the complex has planarity and an extended π
system, which leads to the probability of DNA intercalation.
Computational
Analysis
Bond Lengths and Bond Angles
The optimized geometries
of 4-DMAP, DDQ, and the 1:1 [(4-DMAP)/(DDQ)] complex with the atomic
number in the gas phase and PCM (ACN/methanol) are shown in Figure . Their bond length
and bond angles are given in the Supporting Information (Tables S2 and S3). Table S2 shows that
the C2–O8 and C5–O7 of the DDQ moiety of the complex
increase to 1.252, 1.261, and 1.263 Å in the gas phase and PCM
relative to 1.241 Å for free DDQ. This result indicates the single
bond character of the carbon–oxygen bond in the complex compared
with the double bond in the monomer. The cyano group bond lengths
of DDQ in complex C1–C12 and C6–C11 increase to 1.435,
1.434, and 1.435 Å in the gas state and PCM relative to 1.42
Å for individual DDQ. On the other hand, the bond lengths of
C2–C3 and C3–C4 decrease to 1.417, 1.415, and 1.414
Å in the gas state and PCM in the complex compared with 1.452
Å in 4-DMAP alone. The C1–N6 and C3–N11 bond lengths
are decreased, while one of the C3–N11 distances is more decreased
than the C1–N6 bond. This reveals that the strength of the
charge transfer process is not equivalent. Thus, the planarity of
the donor molecule and the withdrawing ability of the C≡N group
contribute to the strength of CT, which confirms the n-electron transfer
from the highest occupied molecular orbital (HOMO) of 4-DMAP to the
π* lowest unoccupied molecular orbital (LUMO) of carbonyl of
the DDQ moiety.
Figure 8
Optimized geometries in the gas phase of 4-DMAP, DDQ,
and the CT
complex.
Optimized geometries in the gas phase of 4-DMAP, DDQ,
and the CT
complex.The CT complex is further confirmed
by the changes in its bond
angles compared to the monomers as shown in Table S3. The DDQ free radical anion (Scheme ) can further give evidence from the increasing
bond angles of C1–C2–O8 and C6–C5–O7 to
121 and 121.5° in the complex, respectively, compared with 120.2°
in the monomer of DDQ. Moreover, the bond angle of C5–C6–C1
decreases to 120.1°compared with 121° for DDQ. On the other
hand, the bond angles between ring carbon atoms decrease in the complex
relative to 4-DMAP alone, which confirms the π–π*
transition from the HOMO to LUMOs of the CT complex. Similar results
were obtained while applying the PCM model observed in Table S3. There is also no solvent effect in
the bond angle.
Molecular Electrostatic Potential Surfaces
The molecular
electrostatic potential (MEP) surfaces[36] are the most suited graphical presentations which show electrostatic
potential over the surface of a molecule used to identify the electrophilic
and nucleophilic centers. The MEP surfaces labeled by different colors
where blue and red represent most positive and most negative regions,
respectively, while green shows the neutral region. The MEP maps of
4-DMAP, DDQ, and the [(4-DMAP)(DDQ)] complex are depicted in Figure in the gas phase.
The acceptor (DDQ) MEP plot is characterized by a positive region
(blue), which is located at the center (surface map value of 0.07696
au), considered as an electrophile. The negative region is coming
from C=O and C≡N (−0.03126 and −0.03881
au, respectively) groups of DDQ. Regarding the 4-DMAP major negative
region (red) located on the N6 and N11 atoms (−0.0706 and −0.0298
au, respectively), it can be considered as an n-donor
(nucleophile). After complex formation from the donor to th eacceptor,
the C=O, C≡N values are increased and the N11 atom of
4-DMAP decreased to get a positive value. These results suggest the n-electron transfer from N11 of the donor to C=O
and C≡N groups of DDQ. The surface map values of the PCM model
also gave near results. Hence, ESP map surfaces demonstrate good agreement
with the experimental results.
Figure 9
MEP maps of 4-DMAP, DDQ, and the CT complex
in the gas phase.
MEP maps of 4-DMAP, DDQ, and the CT complex
in the gas phase.
HOMO–LUMO of the
CT Complex
Molecular orbital
analysis exhibits that the frontier molecular orbitals are mainly
composed of p-atomic orbitals.[37] HOMO–LUMO
energy (in eV) calculation of the [(4-DMAP)(DDQ)] complex in the ground
state obtained by DFT using wB97XD 6-31+G(d,p) (gas phase and PCM)
is shown in Figures and S4. From Figure , it is seen that the HOMOs are mostly distributed
on 4-DMAP, while LUMOs are mainly localized on the DDQ moiety. The
HOMO is localized on the donor, mainly on the N6 and N11 atomic orbitals.
Thus, one can conclude that the n-electrons are localized
in the HOMO of 4-DMAP. The other molecular orbitals are localized
on the p-atomic orbitals of the pyridine moiety. The n, π-molecular orbitals are detected as HOMOs and π* molecular
orbitals are LUMOs; therefore, the charge transfer can be assigned
as n–π* and π–π*.
Figure 10
HOMO–LUMO
energy gaps of the CT complex in the gas phase,
ACN, and methanol.
HOMO–LUMO
energy gaps of the CT complex in the gas phase,
ACN, and methanol.
Natural Atomic Charges
The natural atomic charges (through
NPA analysis) of 4-DMAP, DDQ, and the [(4-DMAP)(DDQ)] complex in the
gas state (Figure S5) and PCM (ACN/methanol)
are depicted in Table S4. From Table S4, it is seen that the atomic charges
of O7, O8, N14, and N13 increased in the complex relative to the free
DDQ moiety in both gas and PCM phases. Concerning the donor 4-DMAP,
the atomic charges of N11 decreased in the complex compared with free
4-DMAP. These results clearly show that the HOMO–LUMOs are
localized on the given atomic centers of the CT complex in both gas
and PCM phases, supporting the n–π*
transition.
Reactivity Descriptors
Various reactivity
descriptors
such as ionization potential (Ip), electron
affinity (A), chemical potential (μ), hardness
(η), electrophilicity index (ω), and softness (σ)
are calculated from the HOMO–LUMO surfaces, giving insightful
characteristics of reactivity related to chemical reactions.[13] The description of these descriptors is given
by equationsThe electronic interactions of 4-DMAP
and DDQ with formed CT complex descriptors are given in Table S5. From this table, the electronic nature
of DDQ and 4-DMAP molecules is concluded. When deriving HOMO–LUMO
energies of a molecule, a maximum EHOMO makes it a good electron donor, while a minimum ELUMO makes for a good electron acceptor. Here, DDQ has
a lower ELUMO than DMAP, so it is considered
as an electron acceptor; on the other hand, 4-DMAP has a greater EHOMO than the DDQ molecule in gas and PCM analysis,
so it is considered as an electron donor. Additionally, the chemical
potential is a potential index that specifies the path of flow of
electrons between molecules. The flow of electrons arises from a structure
with maximum chemical potential to a minimum chemical potential. As
for this idea of interpretation, 4-DMAP has a greater maximum chemical
potential than DDQ. Also, the electrophilicity of DDQ is >4-DMAP,
confirming that DDQ is a better electrophile than 4-DMAP and is considered
as the e-acceptor and 4-DMAP is the e-donor. The softness values and
these results additionally discovered that 4-DMAP is an electron donor,
while DDQ is an electron acceptor in gas and PCM analysis.
Computed
Electronic Spectra
The calculated electronic
spectra of the resulting complex [(4-DMAP)(DDQ)] in ACN and MeOH solvents
computed using TD-DFT/wB97XD/6-31+G(d,p) are shown in Figure . The TD-DFT calculation provides
excitation energies, oscillator strengths, state dipole moments, band
assignments, and calculated wavelengths collected in Table .
Figure 11
Measured and calculated
electronic spectra of the CT complex in
the gas phase, ACN, and methanol.
Table 6
Relevant Excited States, Energy, Oscillator
Strengths, State Dipole Moments, and HOMO to LUMO Contributions of
the CT Complex
excited state
ΔE (eV)
f
μ
λmax
description
1
2.96
0.0025
0.0342
418
HOMO → LUMO (95%)
2
3.30
0.0011
0.0131
375
HOMO – 4 → LUMO (86%)
HOMO – 6 → LUMO (51%)
HOMO – 5 → LUMO (2.8%)
3
3.5
0.0187
0.2183
353
HOMO – 3 → LUMO (6.4%)
HOMO – 2 → LUMO (24.7%)
HOMO – 1 → LUMO (6.1%)
HOMO – 6 → LUMO (33%)
4
3.54
0.0194
0.2235
350
HOMO – 3 → LUMO (16%)
HOMO – 1 → LUMO (19%)
5
3.84
0.2868
3.0418
322
HOMO – 5 → LUMO (69%)
HOMO – 4 → LUMO (25%)
Measured and calculated
electronic spectra of the CT complex in
the gas phase, ACN, and methanol.To get
further insights into the nature of excited states, natural
transition orbital[38] (NTO) analysis was
performed based on TD-DFT results to offer a compact orbital representation
for the electronic transitions shown in Figure . In order to obtain the absorption spectra
from the optimized ground-state geometry, the dominant NTO is evaluated
for the first five excited states in ACN. The first excited-state
transition at 418 nm corresponds to 95% contribution from mainly HOMO
→ LUMO, which strongly consists of the experimental one in
ACN and MeOH (appearing at 469 and 476 nm, respectively). The next
two excited states correspond to mainly HOMO – 4 → LUMO
(86%), HOMO – 6 → LUMO (51%), and HOMO – 2 →
LUMO (24.7%). The fifth excited state differs primarily in the phase
of the configuration mixing HOMO – 5 → LUMO (69%) and
HOMO – 4 → LUMO (25%); this leads to weak transition
and higher energy, a more intense one. Furthermore, the relevant excited
states with the corresponding dipole moment directions along with
electron density difference maps (EDDM) from S1 to S5 geometries are
shown in Figure .
Figure 12
NTO pairs for the first five excited states of the [(4-DMAP)(DDQ)]
complex. The first excited state is the top of the figure; for each
state, the occupied (holes) is on the left and unoccupied (particles)
is on the right.
Figure 13
(a) Corresponding dipole
moment directions of the CT complex and
(b) EDDMs of first five transitions.
NTO pairs for the first five excited states of the [(4-DMAP)(DDQ)]
complex. The first excited state is the top of the figure; for each
state, the occupied (holes) is on the left and unoccupied (particles)
is on the right.(a) Corresponding dipole
moment directions of the CT complex and
(b) EDDMs of first five transitions.
Conclusions
A new CT complex between 4-DMAP as an electron
donor and DDQ as
an electron acceptor was synthesized and characterized experimentally
in both ACN and methanol solvents at room temperature. The appearance
of new absorption bands in electronic spectra at 617 and 626 nm in
ACN and MeOH suggest the formation of the [(4-DMAP)(DDQ)] complex.
The stoichiometry of the CT complex is 1:1 molar ratio, which is confirmed
by Job’s and photometric methods. Spectroscopic physical parameters
such as KCT, εCT, ECT, ID, RN, W, and ΔG° for the CT complex were evaluated using spectral data. The
CT complex stability depends on polarity of the solvents. The solid
CT complex was confirmed using FT-IR and NMR spectroscopic techniques.
The nature of the CT complex was confirmed by powder XRD analysis,
and the particle size was calculated. The surface morphology and elemental
analysis were confirmed by producing SEM EDX spectra, and it shows
a needle-type structure. The CT complex interacts with CT-DNA via
intercalation, and the binding constant shows good binding affinity.
The theoretical analysis of the complex was confirmed by the DFT method
(wB97XD/6-31G(d,p)), and the bond lengths, bond angles, natural atomic
charges, dipole moments, ESP maps, reactivity parameters, EDDM maps,
and FMO surfaces were evaluated. PCM/TD-DFT was applied to find the
electronic spectra in ACN and methanol.
Experimental Details
Desired
Materials and Chemicals
All chemicals used
were of analytical grade. The donor 4-DMAP (97%) and acceptor DDQ
(99%) were purchased from Sigma-Aldrich, and calf thymus DNA (CT-DNA)
was purchased from Sisco Research laboratory; Tris buffer (Molechem)
and NaCl (99.50% SDFCL) were commercially accessible. Analytical-grade
CH3CN (99.9% Merck) and MeOH (99% Merck) solvent are used
for the preparation of the stock solution.
Synthesis of the 1:1 Solid
4-DMAP–DDQ Complex
The solid 4-DMAP–DDQ complex
(1:1) was arranged by mixing
equimolar amounts of 4-DMAP and DDQ in methanol medium. A reddish-brown
color solution was later produced on the addition of these two reactants.
The saturated solution of 4-DMAP and DDQ in the same solvent was stirred
constantly for about 4–6 h at room temperature. The solution
was allowed to evaporate gradually at room temperature. The solid-precipitated
adduct was filtered and washed a number of times with small amounts
of MeOH and dried under vacuum over anhydrous calcium chloride. The
complex was characterized spectroscopically along with elemental analysis:
(theoretical values are shown in brackets) yield: 81% [(4-DMAP)/(DDQ)]
violet complex: C, 51.52 (51.60%); Cl, 02.19 (20.31%); O, 9.15 (9.16%);
and N, 16.01 (16.05%). The molecular structures of the donor and acceptor
will be depicted.
Preparation of Standard Stock Solutions of
4-DMAP and DDQ
Standard stock solutions of 4-DMAP (10–2 M) and
2,4-DNP (10–2 M) were arranged by dissolving 0.013
g and 0.023 g, respectively, each in separate volumetric flasks of
10 mL with AN and MeOH solvents. The donor and acceptor concentrations
(1 × 10–3 and 1 × 10–3 M, respectively) were each prepared in a 25 mL volumetric flask
by diluting the standard stock solutions. The other solutions were
also arranged by the same procedure in the same solvents, and the
stock solution was protected from light.
Instrumental Measurements
Electronic
Spectra
UV absorption spectra of 4-DMAP,
DDQ, and the resulting [(4-DMAP)/(DDQ)] complex in ACN and MeOH measurements
were made using a SHIMADZU UV-2600 and UV–visible spectrophotometer
within the range of 800–200 nm with 1 cm quartz cell path length.
4-DMAP and DDQ were scanned individually through a spectrophotometric
titration[39] at 25 °C. The wavelength
of the highest absorption of the resulting solution was determined.
FT-IR Spectra
The FT-IR measurement of 4-DMAP, DDQ,
and the [(4-DMAP/DDQ)] complex was recorded in the range of 4000–250
cm-1 employing a Bruker Alpha spectrometer.
1H NMR Spectra
The 1H NMR spectrum
was evaluated in DMSO via a Bruker 400 MHz NMR instrument with TMS
as an internal reference.
Preparation of the DNA Stock Solution
The calf thymus
DNA stock solution was made using 5 mM Tris–HCl and 50 mM NaCl
at 25 °C in double-distilled water. The solution mixture was
stirred overnight to form a clear solution. The pH was adjusted to
7.2 with HCl added to the homogeneous clear buffer solution. The purity
of the DNA solution was explored from the UV absorbance proportion
of about 1.8–1.9 at 260 and 280 nm. It confirms no impurity
protein present in the CT-DNA.[40] UV–visible
and electronic spectroscopy has been used to calculate the concentration
of CT-DNA at an absorbance wavelength of 260 nm by a molar absorptivity
of 6600 M–1 cm–1. The prepared
solutions were kept at a lower temperature (3–4 °C) and
utilized for 3–4 days. The CT complex was dissolved using 50%
ACN and 50% Tris–HCl buffer solution throughout the examination.
The titration tests were performed at the rigid concentration of the
complex with changing concentrations of DNA (0–10 μM).
Computational Details
The Gaussian 09 program[41] was used for the DFT calculation of 4-DMAP,
DDQ, and the resulting [(4-DMAP)/(DDQ)] complex in the gas phase.
The geometries of the complex were optimized using the latest hybrid
functional (wB97XD) 6-31+G(d,p) basis set.[42] In addition to optimization, TD-DFT calculations were carried out
at the same level to explain the origin of electronic spectra, using
(integrated equation formalism for the polarizable continuum salvation
model) IEF-PCM ACN and methanol as solvents. The Gauss View 5.0.8[43] program has been used to extract the calculation
results and visualize the optimized structures, FMO surfaces, Reactivity
parameters, and MEP maps.
SEM–EDX Details
The surface
morphology of the
[(4-DMAP)/(DDQ)] complex was recognized by SEM (scanning electron
microscopy on a Zeiss evo18). The chemical composition of the CT complex
was analyzed using an EDX spectrometer attached to an SEM instrument.
Powdered XRD Analysis
Powdered X-ray diffraction study
was performed with a Rigaku MiniFlex 600 X-ray diffractometer through
Cu Kα radiation (λ = 1.5406 Å) at a step size of
0.02° and a scan step time of 0.15 s in the 2θ range from
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