Literature DB >> 35030251

Congenital anemia reveals distinct targeting mechanisms for master transcription factor GATA1.

Leif S Ludwig1,2,3,4,5, Caleb A Lareau1,2,3,6,7, Erik L Bao1,2,3,8, Nan Liu1,2,9,10, Taiju Utsugisawa11, Alex M Tseng6,7, Samuel A Myers3,12, Jeffrey M Verboon1,2,3, Jacob C Ulirsch1,2,3,13, Wendy Luo1,2,3, Christoph Muus3,14, Claudia Fiorini1,2,3, Meagan E Olive3, Christopher M Vockley3, Mathias Munschauer3,15,16, Abigail Hunter17, Hiromi Ogura11, Toshiyuki Yamamoto18, Hiroko Inada19, Shinichiro Nakagawa20, Shuichi Ohzono20, Vidya Subramanian3, Roberto Chiarle21, Bertil Glader22, Steven A Carr3, Martin J Aryee3,23,24, Anshul Kundaje6,7, Stuart H Orkin1,2,25, Aviv Regev3,25,26,27, Timothy L McCavit17, Hitoshi Kanno11, Vijay G Sankaran3,28.   

Abstract

Master regulators, such as the hematopoietic transcription factor (TF) GATA1, play an essential role in orchestrating lineage commitment and differentiation. However, the precise mechanisms by which such TFs regulate transcription through interactions with specific cis-regulatory elements remain incompletely understood. Here, we describe a form of congenital hemolytic anemia caused by missense mutations in an intrinsically disordered region of GATA1, with a poorly understood role in transcriptional regulation. Through integrative functional approaches, we demonstrate that these mutations perturb GATA1 transcriptional activity by partially impairing nuclear localization and selectively altering precise chromatin occupancy by GATA1. These alterations in chromatin occupancy and concordant chromatin accessibility changes alter faithful gene expression, with failure to both effectively silence and activate select genes necessary for effective terminal red cell production. We demonstrate how disease-causing mutations can reveal regulatory mechanisms that enable the faithful genomic targeting of master TFs during cellular differentiation.
© 2022 by The American Society of Hematology.

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Year:  2022        PMID: 35030251      PMCID: PMC9029090          DOI: 10.1182/blood.2021013753

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   25.476


  64 in total

1.  Familial dyserythropoietic anaemia and thrombocytopenia due to an inherited mutation in GATA1.

Authors:  K E Nichols; J D Crispino; M Poncz; J G White; S H Orkin; J M Maris; M J Weiss
Journal:  Nat Genet       Date:  2000-03       Impact factor: 38.330

2.  Analysis of disease-causing GATA1 mutations in murine gene complementation systems.

Authors:  Amy E Campbell; Lorna Wilkinson-White; Joel P Mackay; Jacqueline M Matthews; Gerd A Blobel
Journal:  Blood       Date:  2013-05-23       Impact factor: 22.113

3.  Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.

Authors:  Ann Boija; Isaac A Klein; Benjamin R Sabari; Alessandra Dall'Agnese; Eliot L Coffey; Alicia V Zamudio; Charles H Li; Krishna Shrinivas; John C Manteiga; Nancy M Hannett; Brian J Abraham; Lena K Afeyan; Yang E Guo; Jenna K Rimel; Charli B Fant; Jurian Schuijers; Tong Ihn Lee; Dylan J Taatjes; Richard A Young
Journal:  Cell       Date:  2018-11-15       Impact factor: 41.582

4.  Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1.

Authors:  Stephan Kadauke; Maheshi I Udugama; Jan M Pawlicki; Jordan C Achtman; Deepti P Jain; Yong Cheng; Ross C Hardison; Gerd A Blobel
Journal:  Cell       Date:  2012-08-17       Impact factor: 41.582

5.  A method and server for predicting damaging missense mutations.

Authors:  Ivan A Adzhubei; Steffen Schmidt; Leonid Peshkin; Vasily E Ramensky; Anna Gerasimova; Peer Bork; Alexey S Kondrashov; Shamil R Sunyaev
Journal:  Nat Methods       Date:  2010-04       Impact factor: 28.547

Review 6.  Order through disorder: The role of intrinsically disordered regions in transcription factor binding specificity.

Authors:  Sagie Brodsky; Tamar Jana; Naama Barkai
Journal:  Curr Opin Struct Biol       Date:  2021-07-21       Impact factor: 6.809

7.  Altered translation of GATA1 in Diamond-Blackfan anemia.

Authors:  Leif S Ludwig; Hanna T Gazda; Jennifer C Eng; Stephen W Eichhorn; Prathapan Thiru; Roxanne Ghazvinian; Tracy I George; Jason R Gotlib; Alan H Beggs; Colin A Sieff; Harvey F Lodish; Eric S Lander; Vijay G Sankaran
Journal:  Nat Med       Date:  2014-06-22       Impact factor: 53.440

8.  Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis.

Authors:  Leif S Ludwig; Caleb A Lareau; Erik L Bao; Satish K Nandakumar; Christoph Muus; Jacob C Ulirsch; Kaitavjeet Chowdhary; Jason D Buenrostro; Narla Mohandas; Xiuli An; Martin J Aryee; Aviv Regev; Vijay G Sankaran
Journal:  Cell Rep       Date:  2019-06-11       Impact factor: 9.423

9.  CADD: predicting the deleteriousness of variants throughout the human genome.

Authors:  Philipp Rentzsch; Daniela Witten; Gregory M Cooper; Jay Shendure; Martin Kircher
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

10.  Base-resolution models of transcription-factor binding reveal soft motif syntax.

Authors:  Žiga Avsec; Melanie Weilert; Avanti Shrikumar; Sabrina Krueger; Amr Alexandari; Khyati Dalal; Robin Fropf; Charles McAnany; Julien Gagneur; Anshul Kundaje; Julia Zeitlinger
Journal:  Nat Genet       Date:  2021-02-18       Impact factor: 38.330

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  2 in total

Review 1.  Erythroid Cell Research: 3D Chromatin, Transcription Factors and Beyond.

Authors:  Charlotte Andrieu-Soler; Eric Soler
Journal:  Int J Mol Sci       Date:  2022-05-30       Impact factor: 6.208

2.  Novel GATA1 Variant Causing a Bleeding Phenotype Associated with Combined Platelet α-/δ-Storage Pool Deficiency and Mild Dyserythropoiesis Modified by a SLC4A1 Variant.

Authors:  Kerstin Jurk; Anke Adenaeuer; Stefanie Sollfrank; Kathrin Groß; Friederike Häuser; Andreas Czwalinna; Josef Erkel; Nele Fritsch; Dana Marandiuc; Martin Schaller; Karl J Lackner; Heidi Rossmann; Frauke Bergmann
Journal:  Cells       Date:  2022-09-29       Impact factor: 7.666

  2 in total

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