Literature DB >> 35027872

Rapid, Affordable, and Scalable SARS-CoV-2 Detection From Saliva.

Andrew Hayden1, Marcy Kuentzel1, Sridar V Chittur1,2.   

Abstract

Here we present an inexpensive, rapid, and robust reverse-transcription loop-mediated isothermal amplification (RT-LAMP)-based severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) detection method that is easily scalable, enabling point-of-care facilities and clinical labs to determine results from patients' saliva directly in 30 minutes for less than $2 per reaction. The method uses a novel combination of widely available reagents that can be prepared in bulk, plated, and frozen and remain stable until samples are received. This innovation dramatically reduces preparation time, enabling high-throughput automation and testing with time to results (including setup) in less than 1 hour for 96 patient samples simultaneously when using a 384-well format. By using a dual reporter (phenol red pH indicator for end-point detection and SYTO-9 fluorescent dye for real time), the assay also provides internal validation of results and redundancy in the event of an instrument malfunction.
© 2021 ABRF.

Entities:  

Keywords:  Fluorescent LAMP; RT-LAMP; extraction-free detection; saliva detection

Mesh:

Substances:

Year:  2021        PMID: 35027872      PMCID: PMC8730515          DOI: 10.7171/jbt.21-3203-010

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  34 in total

1.  Impact of primer dimers and self-amplifying hairpins on reverse transcription loop-mediated isothermal amplification detection of viral RNA.

Authors:  Robert J Meagher; Aashish Priye; Yooli K Light; Cheng Huang; Eryu Wang
Journal:  Analyst       Date:  2018-04-16       Impact factor: 4.616

2.  Simultaneous multiple target detection in real-time loop-mediated isothermal amplification.

Authors:  Nathan A Tanner; Yinhua Zhang; Thomas C Evans
Journal:  Biotechniques       Date:  2012-08       Impact factor: 1.993

3.  Regulated transport of ribosomal subunits from regenerating rat liver nuclei in a cell-free system.

Authors:  L C Yu; J Racevskis; T E Webb
Journal:  Cancer Res       Date:  1972-11       Impact factor: 12.701

4.  Method for colorimetric detection of double-stranded nucleic acid using leuco triphenylmethane dyes.

Authors:  Shigehiko Miyamoto; Sotaro Sano; Koji Takahashi; Takaaki Jikihara
Journal:  Anal Biochem       Date:  2015-01-07       Impact factor: 3.365

5.  Dual-Priming Isothermal Amplification (DAMP) for Highly Sensitive and Specific Molecular Detection with Ultralow Nonspecific Signals.

Authors:  Xiong Ding; Zhiheng Xu; Kun Yin; Maroun Sfeir; Changchun Liu
Journal:  Anal Chem       Date:  2019-09-26       Impact factor: 6.986

6.  Accessible LAMP-Enabled Rapid Test (ALERT) for Detecting SARS-CoV-2.

Authors:  Ali Bektaş; Michael F Covington; Guy Aidelberg; Anibal Arce; Tamara Matute; Isaac Núñez; Julia Walsh; David Boutboul; Constance Delaugerre; Ariel B Lindner; Fernán Federici; Anitha D Jayaprakash
Journal:  Viruses       Date:  2021-04-23       Impact factor: 5.048

7.  Progress in loop-mediated isothermal amplification assay for detection of Schistosoma mansoni DNA: towards a ready-to-use test.

Authors:  J García-Bernalt Diego; P Fernández-Soto; B Crego-Vicente; S Alonso-Castrillejo; B Febrer-Sendra; A Gómez-Sánchez; B Vicente; J López-Abán; A Muro
Journal:  Sci Rep       Date:  2019-10-14       Impact factor: 4.379

8.  Detection and Isolation of SARS-CoV-2 in Serum, Urine, and Stool Specimens of COVID-19 Patients from the Republic of Korea.

Authors:  Jeong-Min Kim; Heui Man Kim; Eun Jung Lee; Hye Jun Jo; Youngsil Yoon; Nam-Joo Lee; Junseock Son; Ye-Ji Lee; Mi Seon Kim; Yong-Pyo Lee; Su-Jin Chae; Kye Ryeong Park; Seung-Rye Cho; Sehee Park; Su Jin Kim; Eunbyeol Wang; SangHee Woo; Aram Lim; Su-Jin Park; JunHyeong Jang; Yoon-Seok Chung; Bum Sik Chin; Jin-Soo Lee; Duko Lim; Myung-Guk Han; Cheon Kwon Yoo
Journal:  Osong Public Health Res Perspect       Date:  2020-06

9.  A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples.

Authors:  Viet Loan Dao Thi; Konrad Herbst; Kathleen Boerner; Matthias Meurer; Lukas Pm Kremer; Daniel Kirrmaier; Andrew Freistaedter; Dimitrios Papagiannidis; Carla Galmozzi; Megan L Stanifer; Steeve Boulant; Steffen Klein; Petr Chlanda; Dina Khalid; Isabel Barreto Miranda; Paul Schnitzler; Hans-Georg Kräusslich; Michael Knop; Simon Anders
Journal:  Sci Transl Med       Date:  2020-07-27       Impact factor: 17.956

10.  Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy.

Authors:  Parinaz Fozouni; Sungmin Son; María Díaz de León Derby; Gavin J Knott; Carley N Gray; Michael V D'Ambrosio; Chunyu Zhao; Neil A Switz; G Renuka Kumar; Stephanie I Stephens; Daniela Boehm; Chia-Lin Tsou; Jeffrey Shu; Abdul Bhuiya; Maxim Armstrong; Andrew R Harris; Pei-Yi Chen; Jeannette M Osterloh; Anke Meyer-Franke; Bastian Joehnk; Keith Walcott; Anita Sil; Charles Langelier; Katherine S Pollard; Emily D Crawford; Andreas S Puschnik; Maira Phelps; Amy Kistler; Joseph L DeRisi; Jennifer A Doudna; Daniel A Fletcher; Melanie Ott
Journal:  Cell       Date:  2020-12-04       Impact factor: 41.582

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  2 in total

1.  Development and implementation of a simple and rapid extraction-free saliva SARS-CoV-2 RT-LAMP workflow for workplace surveillance.

Authors:  Zhiru Li; Jacqueline L Bruce; Barry Cohen; Caileigh V Cunningham; William E Jack; Katell Kunin; Bradley W Langhorst; Jacob Miller; Reynes A Moncion; Catherine B Poole; Prem K Premsrirut; Guoping Ren; Richard J Roberts; Nathan A Tanner; Yinhua Zhang; Clotilde K S Carlow
Journal:  PLoS One       Date:  2022-05-26       Impact factor: 3.752

Review 2.  Progression of LAMP as a Result of the COVID-19 Pandemic: Is PCR Finally Rivaled?

Authors:  Cassidy Mannier; Jeong-Yeol Yoon
Journal:  Biosensors (Basel)       Date:  2022-07-06
  2 in total

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